View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0426_low_9 (Length: 317)
Name: NF0426_low_9
Description: NF0426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0426_low_9 |
 | |
|
| [»] scaffold0038 (2 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 145 - 268
Target Start/End: Complemental strand, 28525694 - 28525571
Alignment:
| Q |
145 |
ttgattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccacctt |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28525694 |
ttgattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccactaa |
28525595 |
T |
|
| Q |
245 |
ctgatgttcacatataatctctgc |
268 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
28525594 |
ctgatgttcacatataatctctgc |
28525571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 148 - 268
Target Start/End: Complemental strand, 28246836 - 28246716
Alignment:
| Q |
148 |
attttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccaccttctg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28246836 |
attttatcttttcataaggattggtgaattgaatatcatccatgttattttgctctttgtaaaaatggattccaatttctgttattggttccacctcctg |
28246737 |
T |
|
| Q |
248 |
atgttcacatataatctctgc |
268 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
28246736 |
atgttcacatataatctctgc |
28246716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 148 - 268
Target Start/End: Complemental strand, 28191872 - 28191752
Alignment:
| Q |
148 |
attttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccaccttctg |
247 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | |
|
|
| T |
28191872 |
attttatccttttataaggatcggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccactctcgg |
28191773 |
T |
|
| Q |
248 |
atgttcacatataatctctgc |
268 |
Q |
| |
|
||||||| || ||| |||||| |
|
|
| T |
28191772 |
atgttcatatgtaacctctgc |
28191752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 148 - 268
Target Start/End: Complemental strand, 28239846 - 28239726
Alignment:
| Q |
148 |
attttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccaccttctg |
247 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
28239846 |
attttaacctttcttaaggattggtgaattgaatgtcatccatgttattttcgtgtttgaaaaaatggattccaatttctgttagtggttccacatttga |
28239747 |
T |
|
| Q |
248 |
atgttcacatataatctctgc |
268 |
Q |
| |
|
||||||| |||||| |||||| |
|
|
| T |
28239746 |
atgttcaaatataacctctgc |
28239726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 150 - 268
Target Start/End: Complemental strand, 28329070 - 28328952
Alignment:
| Q |
150 |
tttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccaccttctgat |
249 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| | ||| |
|
|
| T |
28329070 |
tttatcttttcataaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgat |
28328971 |
T |
|
| Q |
250 |
gttcacatataatctctgc |
268 |
Q |
| |
|
|||| ||| ||| |||||| |
|
|
| T |
28328970 |
gttcccatctaacctctgc |
28328952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 150 - 268
Target Start/End: Complemental strand, 28506706 - 28506588
Alignment:
| Q |
150 |
tttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccaccttctgat |
249 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| | ||| |
|
|
| T |
28506706 |
tttatcttttcataaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgat |
28506607 |
T |
|
| Q |
250 |
gttcacatataatctctgc |
268 |
Q |
| |
|
|||| ||| ||| |||||| |
|
|
| T |
28506606 |
gttcccatctaacctctgc |
28506588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 148 - 268
Target Start/End: Complemental strand, 46998 - 46878
Alignment:
| Q |
148 |
attttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccaccttctg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46998 |
attttatcttttcataaggattggtgaattgaatatcatccatgttattttgctctttgtaaaaatggattccaatttctgttattggttccacctcctg |
46899 |
T |
|
| Q |
248 |
atgttcacatataatctctgc |
268 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46898 |
atgttcacatataatctctgc |
46878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 148 - 268
Target Start/End: Complemental strand, 40008 - 39888
Alignment:
| Q |
148 |
attttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccaccttctg |
247 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
40008 |
attttaacctttcttaaggattggtgaattgaatgtcatccatgttattttcgtgtttgaaaaaatggattccaatttctgttagtggttccacatttga |
39909 |
T |
|
| Q |
248 |
atgttcacatataatctctgc |
268 |
Q |
| |
|
||||||| |||||| |||||| |
|
|
| T |
39908 |
atgttcaaatataacctctgc |
39888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 148 - 268
Target Start/End: Original strand, 54935 - 55055
Alignment:
| Q |
148 |
attttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccaccttctg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
54935 |
attttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccaccttcgg |
55034 |
T |
|
| Q |
248 |
atgttcacatataatctctgc |
268 |
Q |
| |
|
|||||||||| ||| |||||| |
|
|
| T |
55035 |
atgttcacatgtaacctctgc |
55055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1776 times since January 2019
Visitors: 3237