View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0427_high_7 (Length: 252)
Name: NF0427_high_7
Description: NF0427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0427_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 27844315 - 27844201
Alignment:
| Q |
133 |
atattaaattcatacttttatgcttaaa-gacttgtgtttatagactaacaaattatatacatttattagttatatatctcttgatttttggacattcac |
231 |
Q |
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| T |
27844315 |
atattaaattcatacttttatgcttaaaagacttgtgtttatagactaacaaattatatacatttattagttatatatctcttgatttttggacattcac |
27844216 |
T |
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| Q |
232 |
gagcacaaagtataa |
246 |
Q |
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| T |
27844215 |
gagcacaaagtataa |
27844201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 27844408 - 27844333
Alignment:
| Q |
30 |
cataggagggtaaaatttcaacatggaaatattagttgatgacccaatcaatgctttttattcaaaatatcaggtt |
105 |
Q |
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| T |
27844408 |
cataggagggtaaaatttcaacatggaaatattagttgatgacccaatcaatgctttttattcaaaatatcaggtt |
27844333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 7952421 - 7952489
Alignment:
| Q |
30 |
cataggagggtaaaatttcaacatggaaatattagttgatgacccaatcaatgctttttattcaaaata |
98 |
Q |
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| T |
7952421 |
catatgagggtaaaattccaacatggaaatattagtttatgacccaatcattgcattatattcaaaata |
7952489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 27843388 - 27843454
Alignment:
| Q |
138 |
aaattcatacttttatgcttaaagacttgtgtttatagactaacaaattatatacatttattagtta |
204 |
Q |
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| T |
27843388 |
aaattcatatttttatgcttaaagacgtatgtttatagactaacaaattctatataattattagtta |
27843454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 1070091 - 1070156
Alignment:
| Q |
30 |
cataggagggtaaaatttcaacatggaaatattagttgatgacccaatcaatgctttttattcaaa |
95 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||| ||||| | | ||||||||||| |
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| T |
1070091 |
cataggagggtaaaattccaacatgaaaatattagttgatgacctaatcattacattttattcaaa |
1070156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 27804203 - 27804146
Alignment:
| Q |
141 |
ttcatacttttatgcttaaagacttgtgtttatagactaacaaattatatacatttattagtta |
204 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
27804203 |
ttcatatttttatgcttaaagactt------atagactaacaaattatatatatttattagtta |
27804146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 27843489 - 27843529
Alignment:
| Q |
206 |
atatctcttgatttttggacattcacgagcacaaagtataa |
246 |
Q |
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||||||||| |||||||||||||||| | |||||||||||| |
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| T |
27843489 |
atatctcttaatttttggacattcacaatcacaaagtataa |
27843529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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