View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0427_low_1 (Length: 564)
Name: NF0427_low_1
Description: NF0427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0427_low_1 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 86 - 564
Target Start/End: Complemental strand, 26640234 - 26639755
Alignment:
| Q |
86 |
atcatcatttgttttacattttatcaagtaatgaaacttacttctgctatagcatggcatgcctcctcgagaacgtattctttgttgaaagaatcacatc |
185 |
Q |
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| T |
26640234 |
atcatcatttgttttacattttatcaagtaatgaaacttacttctgctatagcatggcatgcctcctcgagaacgtattctttgttgaaagaatcacatc |
26640135 |
T |
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| Q |
186 |
cctgaatatcataagaaaaagaaaggacatcaagtttcataaccaaactatgctcttgaaactata---aagtaggaagataactaccttttgacacact |
282 |
Q |
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| T |
26640134 |
cctgaatatcataagaaaaagaaaggacatcaagtttcataaccaaattatgctcttgaaactataaagaagtaggaagataactaccttttgacacact |
26640035 |
T |
|
| Q |
283 |
ccttcgtcttcgacgattgttttctcctcaacttcggataaagttttccttctgcattttgcttcaccgttttgaaccatctaattcatcaggnnnnnnn |
382 |
Q |
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| T |
26640034 |
ccttcgtcttcgacgattgttttctcctcaacttcggataaagttttccttctgcattttgcttcaccgttttgaaccatctaattcatcagg------a |
26639941 |
T |
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| Q |
383 |
nnnnnnnnncacttcactattttttatccttctaatcatacaacaa----nnnnnnnnatctttctgccgtgaaactaccttcaagatttctggatcatt |
478 |
Q |
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| T |
26639940 |
aaaaaaaaacacttcactattttttatccttctaatcatacaacaattttttttttttatctttctgccgtgaaactaccttcaagatttctggatcatt |
26639841 |
T |
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| Q |
479 |
ccatggtcccttgtcagaaagcatgcaaccacctttgtctgcacaagtacacgtacccaccaagaactctggaagttcactgttaa |
564 |
Q |
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| T |
26639840 |
ccatggtcccttgtcagaaagcatgcaaccacctttgtctgcacaagtacacgtaccccccaagaactctggaagttcactgttaa |
26639755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 26661292 - 26661201
Alignment:
| Q |
130 |
tgctatagcatgg-catgcctcctcgagaacgtattctttgttgaaagaatcacatccctgaatatcataagaaaaagaaaggacatcaagtt |
221 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| ||| |||||||| ||||||||||| | |||||||| |
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| T |
26661292 |
tgctatagcatgggcatgcctcctcgagaacagattctttgttgatagaatcacattcct-tatatcataggaaaaagaaagaatatcaagtt |
26661201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 26656326 - 26656272
Alignment:
| Q |
130 |
tgctatagcatggcatgcctcctcgagaacgtattctttgttgaaagaatcacat |
184 |
Q |
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| T |
26656326 |
tgctatagcatggcatgcctctttgagaacaggttctttgttgagagaatcacat |
26656272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 451 - 560
Target Start/End: Complemental strand, 5328300 - 5328191
Alignment:
| Q |
451 |
aaactaccttcaagatttctggatcattccatggtcccttgtcagaaagcatgcaaccacctttgtctgcacaagtacacgtacccaccaagaactctgg |
550 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| || ||||||||||| ||||| |||||||||| || |
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| T |
5328300 |
aaactaccttcaagatctctggatcattccatggacccttgtcagatagcatgcagccacctttatcagcacaagtacaagtaccacccaagaactccgg |
5328201 |
T |
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| Q |
551 |
aagttcactg |
560 |
Q |
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| T |
5328200 |
aagttcactg |
5328191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 451 - 560
Target Start/End: Complemental strand, 54774458 - 54774349
Alignment:
| Q |
451 |
aaactaccttcaagatttctggatcattccatggtcccttgtcagaaagcatgcaaccacctttgtctgcacaagtacacgtacccaccaagaactctgg |
550 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| || ||||||||||| ||||| |||||||||| || |
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| T |
54774458 |
aaactaccttcaagatctctggatcattccatggacccttgtcagatagcatgcagccacctttatcagcacaagtacaagtaccacccaagaactccgg |
54774359 |
T |
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| Q |
551 |
aagttcactg |
560 |
Q |
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|||||||||| |
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| T |
54774358 |
aagttcactg |
54774349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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