View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0427_low_6 (Length: 347)
Name: NF0427_low_6
Description: NF0427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0427_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 1945780 - 1945586
Alignment:
| Q |
1 |
attcttcggttgcaaatctttgatggagcggatcttttgaatgaaaggacaactactgaactaacatatcttaagaaggcatgttctctgatgaaaaatg |
100 |
Q |
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| T |
1945780 |
attcttcggttgcaaatctttgaaggaaaggatcttttgaatgaaaggacaaatactgaactaaaatatcttaagaaggcatgttctctgatgaaaaatg |
1945681 |
T |
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| Q |
101 |
caactacgcatttttatactcagtccttatgatcaaggtaattttatacgtaaaaaattctacaattttatactcagtcatgcggcttgaacatt |
195 |
Q |
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| T |
1945680 |
caactacacaattttatactcagtccttatgatcaaggtaattttatacgtaaaaaattctacaattttatactcagtcatgcggcttgaacatt |
1945586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 252 - 337
Target Start/End: Complemental strand, 1945522 - 1945436
Alignment:
| Q |
252 |
ctatcatcgaaggttaatgaatactaatgattaaccagttttatggttaatt-aagttcgtaaatagcgctcactcacctgcctatg |
337 |
Q |
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| T |
1945522 |
ctatcatcgaaggttaatgaatactaatgattaaccagttttatggttaattaaagctcctaaatggcgctcactcacctgcctatg |
1945436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 2057359 - 2057278
Alignment:
| Q |
9 |
gttgcaaatctttgatggagcggatcttttgaatgaaaggacaactactgaactaacatatcttaagaaggcatgttctctg |
90 |
Q |
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| T |
2057359 |
gttgcagatcattgaaggaaaggatcttttaaatgaaaggacaaatactgaactaaaatatcttaagaaggcatgttctctg |
2057278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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