View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428-Insertion-1 (Length: 930)
Name: NF0428-Insertion-1
Description: NF0428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428-Insertion-1 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 684; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 206 - 930
Target Start/End: Original strand, 29465114 - 29465842
Alignment:
| Q |
206 |
ttacggtttatgatatgatatgtttgtcgaatatgcaatccttccacgttgatcccatatcaatatcattacacgagattaatttgtctatgaaacttac |
305 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29465114 |
ttacggtttatgatgtgatatgtttgtcgaatatgcaatccttccacgttgatcccacatcaatatcattacacgagattaatttgtctatgaaacttac |
29465213 |
T |
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| Q |
306 |
gctttcatggactaatttgatggtagttagttcatgcacaattgtaactgcctgcaaatttgtctctgaaatgacctaaatttcatagaaacatttgtcg |
405 |
Q |
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| T |
29465214 |
gctttcatggactaatttgatagtagttagttcatgcacaattgtaactgcctgcaaatttgtctctgaaatgacctaaatttcatagaaacatttgtcg |
29465313 |
T |
|
| Q |
406 |
cttttgagctagtattgatgtaacatcaacaagcaatgtaacatgtccagttaacatattacatcatagtctctaacgatagaacttaacaaatgaataa |
505 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29465314 |
cttttgagctcgtattgatgtaacatcaacaagcaatgtaacatgtccagttaacatattacatcatagtctctaacgatagaacttaacaaatgattaa |
29465413 |
T |
|
| Q |
506 |
tcttgaatgacataagagattatttgagctttgcttacaatttcgaaccaatttgtatattcacttgtttaaacataatttatcagactcatgaaatgat |
605 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29465414 |
tcttgaatgacataagagattatttgagctttgcttacaattttgaaccaatttgtatattcacttgtttaaacataatttatcagactcatgaaatgat |
29465513 |
T |
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| Q |
606 |
gcgataatagatcattgaataaaaatatatcattcatcatac----tcattaattgatgttgaaacttcaggcatacgtaacacaagaagatgtgttgtt |
701 |
Q |
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| T |
29465514 |
gcgataatagatcattgaataaaactatatcattcatcatactcattcattaattgatgttgaaacttcaggcatacgtaacacaagaagatgtgttgtt |
29465613 |
T |
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| Q |
702 |
aggaactcttacagtgaaagaaacaataacatattcagcacatttacgtcttccatcaacaatgtccaaagaagaaatcaacggcttagttgatgcaaca |
801 |
Q |
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| T |
29465614 |
aggaactcttacagtgaaagaaacaataacatattcagcacatttacgtcttccatcaacaatgtccaaagaagaaatcaacggcttagttgatgcaaca |
29465713 |
T |
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| Q |
802 |
atcattgaaatgggtctccatgactgtgcagataggttaataggtaactggcatttgagaggtataagtggtggcgaaaggaaaagaactagcattgcac |
901 |
Q |
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| T |
29465714 |
atcattgaaatgggtctccatgactgtgcagataggttaataggtaactggcatttgagaggtataagtggtggcgaaaggaaaagaactagcattgcac |
29465813 |
T |
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| Q |
902 |
ttgagattctcacaaggcctcggttgctg |
930 |
Q |
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| T |
29465814 |
ttgagattctcacaaggcctcggttgctg |
29465842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 637 - 923
Target Start/End: Original strand, 29432718 - 29433004
Alignment:
| Q |
637 |
attcatcatactcattaattgatgttgaaacttcaggcatacgtaacacaagaagatgtgttgttaggaactcttacagtgaaagaaacaataacatatt |
736 |
Q |
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| T |
29432718 |
attcatcatactcattaattgatgttgaaacttcaggcatacgtaacacaagaagatgtgttgttaggaactcttacagtgaaagaaacgatagcatatt |
29432817 |
T |
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| Q |
737 |
cagcacatttacgtcttccatcaacaatgtccaaagaagaaatcaacggcttagttgatgcaacaatcattgaaatgggtctccatgactgtgcagatag |
836 |
Q |
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| T |
29432818 |
cagcacatttacgtcttccgtcaacaatgtccaaagaagaagtcagcagcataatcgatggaacaatcatagaaatgggtctccaagactgtgcagatag |
29432917 |
T |
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| Q |
837 |
gttaataggtaactggcatttgagaggtataagtggtggcgaaaggaaaagaactagcattgcacttgagattctcacaaggcctcg |
923 |
Q |
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| T |
29432918 |
gttaataggtaactggcatctgagaggtataagcggcggtgaaaggaaaagaactagcattgcacttgagattctcacaaagcctcg |
29433004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 29464582 - 29464783
Alignment:
| Q |
8 |
aatctaaatgtccaaatgctgttgcaggtagacttgcaaaaaatgtggtaatgacaggaaatgtttttctcaatgggaagnnnnnnnctccaggctatgg |
107 |
Q |
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| T |
29464582 |
aatctaaatgtccaaatgctgttgcaggtagacttgcaaaaaatgtggtaatgacaggaaatgtttttctcaatgggaagaaaaaaactccaggctatgg |
29464681 |
T |
|
| Q |
108 |
ttttgttgtaagtacactaacacatattgttgctaatcagaatttattttgagcacctattttcatttctttaatgactgaaaatgttccacatgcattt |
207 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29464682 |
ttttgttgtaagtacactaacacatattgttgctagtcagaatttattttgagcacctattttcatttctttaatgactgaaaatgttccacatgcattt |
29464781 |
T |
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| Q |
208 |
ac |
209 |
Q |
| |
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|| |
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| T |
29464782 |
ac |
29464783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 29432513 - 29432616
Alignment:
| Q |
28 |
gttgcaggtagacttgcaaaaaatgtggtaatgacaggaaatgtttttctcaatgggaagnnnnnnnctccaggctatggttttgttgtaagtacactaa |
127 |
Q |
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||||||||||||||| ||||||||||||| ||||| ||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||| |
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| T |
29432513 |
gttgcaggtagacttccaaaaaatgtggtgatgacgggaaatgttcttctcaatgggaagaaaaaaattccggactatggttttgttgtaagtacactaa |
29432612 |
T |
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| Q |
128 |
caca |
131 |
Q |
| |
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|||| |
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| T |
29432613 |
caca |
29432616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 682 - 920
Target Start/End: Original strand, 29479814 - 29480052
Alignment:
| Q |
682 |
acacaagaagatgtgttgttaggaactcttacagtgaaagaaacaataacatattcagcacatttacgtcttccatcaacaatgtccaaagaagaaatca |
781 |
Q |
| |
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||||||||||| | ||||| ||||| || ||||||| ||| |||||| | || |||||| ||||| | |||||| | |||||| | |||||||| | | |
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| T |
29479814 |
acacaagaagacatattgttgggaacactaacagtgagagagacaatatcttactcagcaaatttaaggcttccagctacaatgacaaaagaagaggtaa |
29479913 |
T |
|
| Q |
782 |
acggcttagttgatgcaacaatcattgaaatgggtctccatgactgtgcagataggttaataggtaactggcatttgagaggtataagtggtggcgaaag |
881 |
Q |
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| | | | || || | |||||| || || |||||||| || || ||||| ||||| | ||||| || ||||| || ||||||||||||||||| |||| |
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| T |
29479914 |
atgacattgtagaaggaacaataatggagatgggtcttcaagattgtgctgatagacttataggaaattggcacttaagaggtataagtggtggagaaaa |
29480013 |
T |
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| Q |
882 |
gaaaagaactagcattgcacttgagattctcacaaggcc |
920 |
Q |
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| T |
29480014 |
gaaaagaactagcatagcacttgaaattcttactaggcc |
29480052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 486
Target Start/End: Complemental strand, 22602531 - 22602464
Alignment:
| Q |
419 |
attgatgtaacatcaacaagcaatgtaacatgtccagttaacatattacatcatagtctctaacgata |
486 |
Q |
| |
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| T |
22602531 |
attgatgtgagatcaacgtgcaatgtgacatgtccagttaacatgtcacatcatagcctctaaagata |
22602464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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