View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428-Insertion-4 (Length: 650)
Name: NF0428-Insertion-4
Description: NF0428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 532; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 7 - 645
Target Start/End: Original strand, 1959550 - 1960166
Alignment:
| Q |
7 |
aaacaagtagtcaaaactatactagatcggtcgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccacaa |
106 |
Q |
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| T |
1959550 |
aaacaagtagtcaaaactatactagattggtcgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccacaa |
1959649 |
T |
|
| Q |
107 |
gaaaataggtttgtatccctataatcttaatcactgctgtccccttacttgatggaatgctacaaagttattttaattatattgtatacatgttaaacca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1959650 |
gaaaataggtttgtatccctataatcttaatcactgctgtcctcttacttgatggaatgctacaaagttatttgaattatattgtatacatgttaaacca |
1959749 |
T |
|
| Q |
207 |
cctttgttgtgtgtatcagaaatttccaatcgtgaaatatggcaaaagagaagttccatcaaggcctcttgccatggagaaagaaacataatcatgcact |
306 |
Q |
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| T |
1959750 |
cctttgttgtgtgtatcagaaatttccaatcttgaaatatggcaaaagagaagttccatcaaggcctcttgccatggagaaagaaacataatcatgcact |
1959849 |
T |
|
| Q |
307 |
gttgtttccctatactttggaggattatcttctgatactaattcctttataggaccataaagttttgttgatggctgaaaacttgtgctataaaagcttg |
406 |
Q |
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| T |
1959850 |
gttgtttccctatactttggaggattatcttctgatactaattcctttataggaccataaagttttgttgatggctgaaaacttgtgctataaaagcttg |
1959949 |
T |
|
| Q |
407 |
caactgatactcttggaccgacatgatttgctaccactctgtgctcaggcacaaacacttcaaatgatcacgagggattgactgcatgttgcaaaagatg |
506 |
Q |
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| T |
1959950 |
caactgatactcttggaccgacatgatttgctaccactctgtgctcaagcacaaacacttcaaatgatcacgagggattgattgcatgttgcaaaagatg |
1960049 |
T |
|
| Q |
507 |
gtgattctgttaaaggaggggatctatccctgagctgatgtactcaaatattttggtgtgcttggataggattgctccaaagaagtaaaagaagttttga |
606 |
Q |
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| T |
1960050 |
gtgattctgttaaaggcggggatcta----------------------tattttggtgtgctttgataagattgctccaaagaagtaaaagaagttttga |
1960127 |
T |
|
| Q |
607 |
attgcattgagagggataatcttttttcccccatcattc |
645 |
Q |
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| T |
1960128 |
attgcattgagagggataatcttttttcccccatcattc |
1960166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 170 - 453
Target Start/End: Complemental strand, 2023612 - 2023329
Alignment:
| Q |
170 |
aaagttattttaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaaatttccaatcgtgaaatatggcaaaagagaagttccatcaag |
269 |
Q |
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| T |
2023612 |
aaagttattttaattatattgcatacatgttaaaccacctttattgtgtgtatcagaaatttccaatcttgaaatatggcaaaggagaagttccatcaag |
2023513 |
T |
|
| Q |
270 |
gcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatactttggaggattatcttctgatactaattcctttataggaccataaagt |
369 |
Q |
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| T |
2023512 |
gcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatactttggaggattatcttctgatactaattcctttataggaccataaagt |
2023413 |
T |
|
| Q |
370 |
tttgttgatggctgaaaacttgtgctataaaagcttgcaactgatactcttggaccgacatgatttgctaccactctgtgctca |
453 |
Q |
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| T |
2023412 |
tttgttgatggctgaaaacttgtgctataaaagcttgcaactgatactcttggaccgacatgatttgctaccactctgtgctca |
2023329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 6 - 164
Target Start/End: Complemental strand, 2023962 - 2023807
Alignment:
| Q |
6 |
caaacaagtagtcaaaactatactagatcggtcgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccaca |
105 |
Q |
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||||||||||||||||||||||||||||| ||| | ||||||||| |||| ||||||||| || | ||||| |||||||||||||| ||||||| || |
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| T |
2023962 |
caaacaagtagtcaaaactatactagatcagtcaagttgggaatcagtctgccctataatcgggta---catgatgttcacaaggttcttgtagtcctca |
2023866 |
T |
|
| Q |
106 |
agaaaataggtttgtatccctataatcttaatcactgctgtccccttacttgatggaat |
164 |
Q |
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| T |
2023865 |
agaaaataggtttgtatccctataatcttaattgttgctgtcctctgacttgatggaat |
2023807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 470 - 640
Target Start/End: Original strand, 5896692 - 5896866
Alignment:
| Q |
470 |
atgatcacgagggattgactgcatgttgcaaaagat--ggtgattctgttaaaggaggggatctatccct--gagctgatgtactcaaatattttggtgt |
565 |
Q |
| |
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|||||||| | ||||| | |||||| ||||||||| |||||||| |||||||||||||||| ||| || | || |||||||||||||||||||||| |
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| T |
5896692 |
atgatcacaacggattaattgcatgctgcaaaagactgggtgattcagttaaaggaggggatccatctctttgggcggatgtactcaaatattttggtga |
5896791 |
T |
|
| Q |
566 |
gcttggataggattgctccaaagaagtaaaagaagttttgaattgcattgagagggataatcttttttcccccat |
640 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||||||| |
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| T |
5896792 |
gcttggagaagattgctccaaagaagtaaaagaagttttgaattacattgaaagggataatattttaccccccat |
5896866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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