View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_1D_high_15 (Length: 230)
Name: NF0428_1D_high_15
Description: NF0428_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_1D_high_15 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 31658741 - 31658970
Alignment:
| Q |
1 |
tgatatgaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaat |
100 |
Q |
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| T |
31658741 |
tgatatgaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctcttttgtagatgcaagaaatggcaat |
31658840 |
T |
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| Q |
101 |
ggtgatggtggaaacgagttttcttctttaattggaatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaattta |
200 |
Q |
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| T |
31658841 |
ggtgatggtggaaacgagttttcttctttaattggaatgttgttatcaaaactaagtaatatagaagagtcatttgatgacaaaatggattccaaattta |
31658940 |
T |
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| Q |
201 |
tatctgaatgcaaataacttttgcaagtgt |
230 |
Q |
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| T |
31658941 |
tatctgaatgcaaataacttttgcaagtgt |
31658970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 31650457 - 31650298
Alignment:
| Q |
19 |
tgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaat---ggtgatggtggaaac |
115 |
Q |
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| T |
31650457 |
tgagaacaattggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatggtggtgatggtcgaaat |
31650358 |
T |
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| Q |
116 |
gagttttcttctttaattggaatgttg---ttatcaaaactgagtaatatagaagagtca |
172 |
Q |
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| T |
31650357 |
ggatattcttgtttatttgaaatgttgttattatcgaaactaagtaatattgaagagtca |
31650298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 31657342 - 31657248
Alignment:
| Q |
136 |
aatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgt |
230 |
Q |
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| T |
31657342 |
aatgttgttatcgaaactaagtaatatagaagagtcatcgtagcacaaaatggattccaattttatgtctgaatggtaagagcttttgcaagtgt |
31657248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 31657434 - 31657390
Alignment:
| Q |
56 |
atctcttccttaggatcctctattgtagatgcaagaaatggcaat |
100 |
Q |
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| T |
31657434 |
atctcttccttgggttcctcttttgtagatgcaagaagtggcaat |
31657390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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