View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0428_1D_high_5 (Length: 488)

Name: NF0428_1D_high_5
Description: NF0428_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0428_1D_high_5
NF0428_1D_high_5
[»] chr6 (3 HSPs)
chr6 (140-465)||(15965761-15966092)
chr6 (50-104)||(33801862-33801917)
chr6 (67-104)||(18139349-18139386)
[»] chr4 (4 HSPs)
chr4 (43-104)||(35788012-35788074)
chr4 (43-104)||(11094740-11094802)
chr4 (43-104)||(52980200-52980262)
chr4 (43-104)||(39592128-39592189)
[»] chr8 (5 HSPs)
chr8 (43-104)||(117263-117325)
chr8 (43-96)||(41522559-41522613)
chr8 (67-104)||(10052320-10052357)
chr8 (43-104)||(13363416-13363478)
chr8 (105-137)||(8395021-8395053)
[»] scaffold0025 (1 HSPs)
scaffold0025 (43-104)||(56536-56599)
[»] chr2 (1 HSPs)
chr2 (54-104)||(29424462-29424512)
[»] chr1 (3 HSPs)
chr1 (43-104)||(27689503-27689565)
chr1 (43-104)||(30551427-30551489)
chr1 (105-143)||(52741479-52741517)
[»] chr3 (3 HSPs)
chr3 (67-104)||(47765655-47765692)
chr3 (105-138)||(51824122-51824155)
chr3 (105-146)||(51825708-51825749)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 140 - 465
Target Start/End: Original strand, 15965761 - 15966092
Alignment:
Q  140 tttaaaatattaatagagttgggaggctaacttgata-tgagttgcaaaaataaaaaccaattgagtggtttactcacttttattgctttgttgagtaat 238  Q
    |||||||||||||||||||| | |  ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15965761 tttaaaatattaatagagttag-acactaacttgataatgacttgcaaaaataaaaaccaattgagtggtttactcacttttattgctttgttgagtaat 15965859  T
Q  239 ctagaaaaataatagaataannnnnnnnn-catgtttaaaaataaatgatttatttagttttagacttcttggagactttgttgtcggttcttttgttga 337  Q
    ||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  15965860 ctagaaaaataatagaataaatttttttttcatgtttaaaaataaatgatttatttagttttagacttcttagagactttgctgtcggttcttttgttga 15965959  T
Q  338 -cacattattaaaattcttttgtaa---ggtaaaatctatctttccaaacgtagctccagtttcggcttcccagttttggtaaaaat--ccaatctcaaa 431  Q
     | ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||  |||||||||||    
T  15965960 cctcattattaaaattcttttgtaaaagggtaaaatctatctttccaaacgtagctccagtttgggctt-ccagttttggtaaaaatagccaatctcaaa 15966058  T
Q  432 agacagcctgcaaatattgtaaaagggttataag 465  Q
    ||||||||||||||||||||||||||||||||||    
T  15966059 agacagcctgcaaatattgtaaaagggttataag 15966092  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 33801862 - 33801917
Alignment:
Q  50 tgttggtggtttacaataaata-caatagaccctgcatgatccaacaatcatcttt 104  Q
    ||||||||||||| |||||| | ||||||||||| ||||||||||||||| |||||    
T  33801862 tgttggtggtttataataaaaaacaatagaccctacatgatccaacaatcctcttt 33801917  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 18139349 - 18139386
Alignment:
Q  67 aaatacaatagaccctgcatgatccaacaatcatcttt 104  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  18139349 aaatacaatagaccctacatgatccaacaatcctcttt 18139386  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 35788074 - 35788012
Alignment:
Q  43 tattagatgttggtggtttacaataaa-tacaatagaccctgcatgatccaacaatcatcttt 104  Q
    |||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||    
T  35788074 tattaggtgttggtgatttacaataaaatgcaatagaccctgcatgatccaacaatcatcttt 35788012  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 11094802 - 11094740
Alignment:
Q  43 tattagatgttggtggtttacaataaa-tacaatagaccctgcatgatccaacaatcatcttt 104  Q
    |||||| |||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||    
T  11094802 tattaggtgttggtggtttacaataaaatacaatagaccttacatgatccaacaatcctcttt 11094740  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 52980262 - 52980200
Alignment:
Q  43 tattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaatcatcttt 104  Q
    |||||| ||||||||||||||||| ||||||||||||| || ||| ||||||||||| |||||    
T  52980262 tattaggtgttggtggtttacaataaaatacaatagactctacataatccaacaatcctcttt 52980200  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 39592128 - 39592189
Alignment:
Q  43 tattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaatcatcttt 104  Q
    |||||| ||||||||||||||||| ||||| |||||| ||| ||||||||||||||| |||||    
T  39592128 tattaggtgttggtggtttacaataaaatataataga-cctacatgatccaacaatcctcttt 39592189  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 117325 - 117263
Alignment:
Q  43 tattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaatcatcttt 104  Q
    ||||| |||||||||||||||||| |||||||||||| |||  |||||||||||||| |||||    
T  117325 tattaaatgttggtggtttacaataaaatacaatagatcctatatgatccaacaatcctcttt 117263  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 41522559 - 41522613
Alignment:
Q  43 tattagatgttggtggtttacaat-aaatacaatagaccctgcatgatccaacaa 96  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||    
T  41522559 tattaggtgttggtggtttacaataaaatacaatagaccctacatcatccaacaa 41522613  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 10052357 - 10052320
Alignment:
Q  67 aaatacaatagaccctgcatgatccaacaatcatcttt 104  Q
    |||||||||||||||| |||||||||||||||||||||    
T  10052357 aaatacaatagaccctacatgatccaacaatcatcttt 10052320  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 13363416 - 13363478
Alignment:
Q  43 tattagatgttggtggtttaca-ataaatacaatagaccctgcatgatccaacaatcatcttt 104  Q
    |||||| |||| |||||| ||| | |||||||||||||||| ||||||||||||||| |||||    
T  13363416 tattaggtgttagtggttcacacaaaaatacaatagaccctacatgatccaacaatcctcttt 13363478  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 8395053 - 8395021
Alignment:
Q  105 aaaataagttaagagacgaaatgatatattaag 137  Q
    ||||||||||||||||| |||||||||||||||    
T  8395053 aaaataagttaagagaccaaatgatatattaag 8395021  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 56536 - 56599
Alignment:
Q  43 tattagatgttggtggtttacaat-aaatacaatag-accctgcatgatccaacaatcatcttt 104  Q
    |||||| ||||||||||||||||| ||||||||||| || || | |||||||||||||||||||    
T  56536 tattaggtgttggtggtttacaataaaatacaatagaacactacgtgatccaacaatcatcttt 56599  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 29424462 - 29424512
Alignment:
Q  54 ggtggtttacaataaatacaatagaccctgcatgatccaacaatcatcttt 104  Q
    |||||||||||||||||  |||||||| | ||||||||||||||| |||||    
T  29424462 ggtggtttacaataaattaaatagaccttacatgatccaacaatcctcttt 29424512  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 27689565 - 27689503
Alignment:
Q  43 tattagatgttggtggtttacaataaa-tacaatagaccctgcatgatccaacaatcatcttt 104  Q
    |||||| |||| |||||| ||| |||| ||||||||||||| |||||||||||||| ||||||    
T  27689565 tattaggtgttagtggttcacactaaaatacaatagaccctacatgatccaacaattatcttt 27689503  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 30551427 - 30551489
Alignment:
Q  43 tattagatgttggtggtttacaataaa-tacaatagaccctgcatgatccaacaatcatcttt 104  Q
    |||||| |||| |||||| ||| |||| ||||||||||||| ||||||||||||||| |||||    
T  30551427 tattaggtgttagtggttcacactaaaatacaatagaccctacatgatccaacaatcctcttt 30551489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 52741517 - 52741479
Alignment:
Q  105 aaaataagttaagagacgaaatgatatattaagtcttta 143  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  52741517 aaaataagttaagggaccaaatgatatattaagtcttta 52741479  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 47765692 - 47765655
Alignment:
Q  67 aaatacaatagaccctgcatgatccaacaatcatcttt 104  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  47765692 aaatacaatagaccctacatgatccaacaatcctcttt 47765655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 51824155 - 51824122
Alignment:
Q  105 aaaataagttaagagacgaaatgatatattaagt 138  Q
    ||||||||||||||||| ||||||||||||||||    
T  51824155 aaaataagttaagagaccaaatgatatattaagt 51824122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 51825708 - 51825749
Alignment:
Q  105 aaaataagttaagagacgaaatgatatattaagtctttaaaa 146  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  51825708 aaaataagttaagggaccaaatgatatattaagcctttaaaa 51825749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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