View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_1D_low_1 (Length: 1029)
Name: NF0428_1D_low_1
Description: NF0428_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_1D_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 506 - 1011
Target Start/End: Original strand, 932316 - 932821
Alignment:
| Q |
506 |
cagagaaagcaaattgtaatgttgaggttggtttgggagatagtcacaaagttgcaataggttagtagcagatatgtatatgatgttgtttttgttattt |
605 |
Q |
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| T |
932316 |
cagagaaagcaaattgtaatgttgaggttggtttgggagatagtcacaaagttgcaataggttagtagcagatatgtatatgatgttgtttttgttattt |
932415 |
T |
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| Q |
606 |
atgtgacttacaaaaaatctctacccatcattgttaatgaaatgagtacaaagaatttgatacacagattttctctggattttcatattttaagtatatg |
705 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
932416 |
atgcgacttacaaaaaatctctacccatcattgttaatgaaatgagtacaaagaatttgatacacagattttctctggattttcatattttaagtatatg |
932515 |
T |
|
| Q |
706 |
gtatctcttagaaacaggttttagtcatttgtttacatgagagttcgtgacttcttatgctacatcccgttttaatgttatcaggtgctgaacttgaaaa |
805 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
932516 |
gtatctcttagaaacaggttttagtcatttgtttacatgagagttcgtgacttcttatgctacatcccgttttaatgttatcaggtgctgaaattgaaaa |
932615 |
T |
|
| Q |
806 |
tttggtagagttcaagtcttctgttgatttgcggtattctcaggattattatgataatgacaagtcctggaatgacatcattcaaaagattatagaaata |
905 |
Q |
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| T |
932616 |
tttggtagagttcaagtcttctgttgatttgcggtattctcaggattattatgataatgacaagtcctggaatgacatcattcaaaagattatagaaata |
932715 |
T |
|
| Q |
906 |
cagtctcgagttcaaaatttgaaaaatagatatgagaaggtgatcggtgaaaatccaggaaaattttgttctgtaaatcaattgagcatgcttggaccgt |
1005 |
Q |
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| T |
932716 |
cagtctcgagttcaaaatttgaaaaatagatatgagaaggtgatcggtgaaaatccaggaaaattttgttctgtaaatcaattgagcatgcttggaccgt |
932815 |
T |
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| Q |
1006 |
ctgatg |
1011 |
Q |
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|||||| |
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| T |
932816 |
ctgatg |
932821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 25 - 440
Target Start/End: Original strand, 931835 - 932250
Alignment:
| Q |
25 |
gactacaattcacaatgtctttgatttgaacttcaatttcaatagtttatagtatgttttacaattttctctattaaccattcagaaagaaaagaacaac |
124 |
Q |
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| T |
931835 |
gactacaattcacaatgtctttgatttgaacttcaatttcaatagtttatagtatgttttacaattttctctattaaccattcagaaagaaaagaacaac |
931934 |
T |
|
| Q |
125 |
agatcattggaagaggttcataagcccgattacgtggcgctgtaagtggattgagttgaaactgaggtcacttcactctcaagaacgtaaatatgaaaaa |
224 |
Q |
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| T |
931935 |
agatcattggaagaggttcataagcccgattacgtggcgctgtaagtggattgagttgaaactgaggtcacttcactctcaagaacgtaaatatgaaaaa |
932034 |
T |
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| Q |
225 |
gagcttgcggcactcaattatacaaagcagcttgatttttcacacttaacattagatggttccggcatcaaatcggtacctatttctggtcggatgcata |
324 |
Q |
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| T |
932035 |
gagcttgcggcactcaattatacaaagcagcttgatttttcacacttaacattagatggttccggcatcaaatcggtacctatttctggtcggatgcata |
932134 |
T |
|
| Q |
325 |
ggaataaaattatgaagaggnnnnnnngagtaagagttgaagagaaatgtgatttagcatcacacatgtctaaccatactttattctcctactatggtat |
424 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
932135 |
ggaataaaattatgaagaggaaaaaaagagtaagagttgaagagaaatgtgatttagcatcacacatgtctaaccatactttattctcctactatggtat |
932234 |
T |
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| Q |
425 |
gccatttccttatata |
440 |
Q |
| |
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|||||||||||||||| |
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| T |
932235 |
gccatttccttatata |
932250 |
T |
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