View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_1D_low_12 (Length: 371)
Name: NF0428_1D_low_12
Description: NF0428_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_1D_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 144 - 330
Target Start/End: Original strand, 42025044 - 42025245
Alignment:
| Q |
144 |
aaaggaccacttaatttagaatagaggaaatatagtaacacctaagattt-atttaatatggcttgctattatgagcgacaagggtactgaaacttttca |
242 |
Q |
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| T |
42025044 |
aaaggaccacttaatttagaatagaggaaatatagtaacacctaagattttatttaatacggcttgctattatgagcgacaagggtactaaaacttttca |
42025143 |
T |
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| Q |
243 |
attttattaatcttcatcaaccacttaa--------------tagaattgataaaatatagcattaaactgtaaaaatggcaactgcaaaagaataaaaa |
328 |
Q |
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| T |
42025144 |
attttattaatcttcatcaaccacttaatagaattgataaggtagaattgataaaatatagctttaaactgtaaaaatggcaactacaaaagaataaaaa |
42025243 |
T |
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| Q |
329 |
ta |
330 |
Q |
| |
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|| |
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| T |
42025244 |
ta |
42025245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 42024910 - 42024985
Alignment:
| Q |
8 |
agatggacatccacatcacgtatcacagaatgtcatctccaaagagatcttctagtacagaaacaaaaaatccaag |
83 |
Q |
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| T |
42024910 |
agatgtacatccacatcacgtatcacagaatgtcatcttcaaagagatcttctagcacagaaacaaaaaatccaag |
42024985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 42025591 - 42025629
Alignment:
| Q |
327 |
aatactagtatatatgcacacatacacttgcactatcac |
365 |
Q |
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| T |
42025591 |
aatactagtatatatgcacacatatacttgcactatcac |
42025629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 1252797 - 1252835
Alignment:
| Q |
327 |
aatactagtatatatgcacacatacacttgcactatcac |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
1252797 |
aatactagtatatatgcacacatacacttgcactatcac |
1252835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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