View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0428_1D_low_16 (Length: 277)

Name: NF0428_1D_low_16
Description: NF0428_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0428_1D_low_16
NF0428_1D_low_16
[»] chr8 (1 HSPs)
chr8 (16-277)||(933655-933916)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 933916 - 933655
Alignment:
Q  16 tggacatctagagtatagatcaatgcaagtgacccaatagcagcacaaagtgtttggtacttcattaacagtttgatctaaattgtactctacacaagct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  933916 tggacatctagagtatagatcaatgcaagtgacccaatagcagcacaaagtgtttggtacttcattaacagtttgatctaaattgtactctacacaagct 933817  T
Q  116 caccagactatgttccaccctcaactatccttgccttacgaatcttcaaaggctttgaaatttttatgcttctttgtttgatgcataacatcacagagcc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  933816 caccagactatgttccaccctcaactatccttgccttacgaatcttcaaaggctttgaaatttttatgcttctttgtttgatgcataacatcacagagcc 933717  T
Q  216 actcaccatgctctccctaaccctctttctattagaactcacttggtctggcctacacacaa 277  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  933716 actcaccatgctctctctaaccctctttctattagaactcacttggtctggcctacacacaa 933655  T

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