View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_1D_low_19 (Length: 256)
Name: NF0428_1D_low_19
Description: NF0428_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_1D_low_19 |
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| [»] scaffold0432 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 9804910 - 9804675
Alignment:
| Q |
4 |
ttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaacggcgactggtcgatgtcgatc |
103 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9804910 |
ttgcccaaataatgaaacgaggttgaactttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaacggcgactgatcgatgtcgatc |
9804811 |
T |
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| Q |
104 |
tcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgttt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
9804810 |
tcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgcttggagagaggttggcaacagcgattgagggagaaaattgtgttt |
9804711 |
T |
|
| Q |
204 |
agggtttcaagagaatgagaaatgaggatgggagga |
239 |
Q |
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| T |
9804710 |
agggtttcaagagaatgagaaatgaggatgggagga |
9804675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 124 - 256
Target Start/End: Complemental strand, 9817693 - 9817561
Alignment:
| Q |
124 |
ttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgaga |
223 |
Q |
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|||||||||||||||||||||||||| ||| || |||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
9817693 |
ttttttctgatcgatgtcgatctcagcaatgttggtaggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgaga |
9817594 |
T |
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| Q |
224 |
aatgaggatgggaggattattttgtttgattga |
256 |
Q |
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| T |
9817593 |
aatgaggatgggaggattcttttgtttgattga |
9817561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 121 - 253
Target Start/End: Complemental strand, 9817577 - 9817445
Alignment:
| Q |
121 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
220 |
Q |
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||||||| | |||| ||||||||||||| |||||| ||||||||||||||||| | ||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
9817577 |
ttcttttgtttgattgatgtcgatctcacctatggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatg |
9817478 |
T |
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| Q |
221 |
agaaatgaggatgggaggattattttgtttgat |
253 |
Q |
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| T |
9817477 |
agaaatgaggattggaggattcttttgattgat |
9817445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 9817448 - 9817341
Alignment:
| Q |
131 |
tgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgagg |
230 |
Q |
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||||||||||||||| ||| ||||||| || |||||||||||||| ||||| |||||||||||| | ||||||||||||| |||||||||||||||||| |
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| T |
9817448 |
tgatcgatgtcgatc-cagcgatggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgagg |
9817350 |
T |
|
| Q |
231 |
atgggagga |
239 |
Q |
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||||||||| |
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| T |
9817349 |
atgggagga |
9817341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9817839 - 9817777
Alignment:
| Q |
1 |
tttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
63 |
Q |
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| T |
9817839 |
tttttgcccaaataatggaacgaggttgaagtttcatgaaaattccatcaaaagagataacca |
9817777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 117 - 253
Target Start/End: Complemental strand, 11708 - 11572
Alignment:
| Q |
117 |
atggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagag |
216 |
Q |
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|||||||||||||| |||||||| |||||||| ||||||| || |||||||||||| | ||| ||||| || |||| ||||||| | | |||||||| |
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| T |
11708 |
atggttcttttttccaatcgatgttgatctcagcgatggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagag |
11609 |
T |
|
| Q |
217 |
aatgagaaatgaggatgggaggattattttgtttgat |
253 |
Q |
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|||| ||| |||||||||||||||| ||||||||||| |
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| T |
11608 |
aatgggaagtgaggatgggaggattcttttgtttgat |
11572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 11843 - 11788
Alignment:
| Q |
5 |
tgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa |
60 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11843 |
tgcccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa |
11788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 239
Target Start/End: Complemental strand, 11585 - 11467
Alignment:
| Q |
121 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
220 |
Q |
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||||||| | ||||| ||||||||||||| | | ||| ||| ||||||||||||| || || ||||||||||| | ||| | || ||||| |||||| |
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| T |
11585 |
ttcttttgtttgatcaatgtcgatctcagcggtagtggtagaagagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaata |
11486 |
T |
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| Q |
221 |
agaaatgaggatgggagga |
239 |
Q |
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| T |
11485 |
agaaatgaggatgggagga |
11467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42778839 - 42778900
Alignment:
| Q |
1 |
tttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
63 |
Q |
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||||||| ||| | |||||||||||||||| || |||||||||||| |||||||||||||||| |
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| T |
42778839 |
tttttgctcaattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca |
42778900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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