View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0428_1D_low_24 (Length: 243)
Name: NF0428_1D_low_24
Description: NF0428_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_1D_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 2847457 - 2847233
Alignment:
| Q |
10 |
tcaacttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaaactctccaagaattgtcctggcatttgcatatgatg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2847457 |
tcaacttaaagcgcatagacactaaaacgttggctgcgaaccggaaacttgcatgcagaaggaaactctccaagaattgtcctggcatttgcatatgatg |
2847358 |
T |
|
| Q |
110 |
tcaagttgaagtcaaaaaatggatggtttatttagattgtctccatatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtaca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2847357 |
tcaagttgaagtcaaaaaatggatggtttatttagattgtctccatatctaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtaca |
2847258 |
T |
|
| Q |
210 |
tatgatgtgaattgtgtgttgatgt |
234 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
2847257 |
tatgctgtgaattgtgtgttgatgt |
2847233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 3160739 - 3160963
Alignment:
| Q |
10 |
tcaacttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaaactctccaagaattgtcctggcatttgcatatgatg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3160739 |
tcaacttaaagcgcatagacactaaaacgttggctgcgaaccggaaacttgcatgcaggaggaaactctccaagaattgtcctggcatttgcatatgatg |
3160838 |
T |
|
| Q |
110 |
tcaagttgaagtcaaaaaatggatggtttatttagattgtctccatatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtaca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3160839 |
tcaagttgaagtcaaaaaatggatggtttatttagattgtctccatatctaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtaca |
3160938 |
T |
|
| Q |
210 |
tatgatgtgaattgtgtgttgatgt |
234 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
3160939 |
tatgctgtgaattgtgtgttgatgt |
3160963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 2874273 - 2874049
Alignment:
| Q |
10 |
tcaacttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaaactctccaagaattgtcctggcatttgcatatgatg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2874273 |
tcaacttaaagcgcatagacactaaaacgttggctgcgaaacggagacttgcaagcaggaggaaactctccaagaattgtcctggcatgtgcatatgatg |
2874174 |
T |
|
| Q |
110 |
tcaagttgaagtcaaaaaatggatggtttatttagattgtctccatatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtaca |
209 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874173 |
ttaagttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtattcttgtacatttattgagcatgcagaaattcgggccaaagatggtaca |
2874074 |
T |
|
| Q |
210 |
tatgatgtgaattgtgtgttgatgt |
234 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
2874073 |
tatgctgtgaattgtgtgttgatgt |
2874049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 2888993 - 2888860
Alignment:
| Q |
10 |
tcaacttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaaactctccaagaattgtcctggcatttgcatatgatg |
109 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
2888993 |
tcaacttaaagcgcatagacactaaaacgttggctgcgaacaggaaactttcatgcaggaggaaacagtccaagaattgtcctggcatttgcatatgatg |
2888894 |
T |
|
| Q |
110 |
tcaagttgaagtcaaaaaatggatggtttattta |
143 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2888893 |
tcaagttgaagtcaaaaaatggatggtttattta |
2888860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 2797826 - 2798045
Alignment:
| Q |
10 |
tcaacttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaaactctccaagaattgtcctggcatttgcatatgatg |
109 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| | |||| |||||| ||||| | |||| |||| | ||||| || ||||| |
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| T |
2797826 |
tcaacttaaagcgcatagacactgaaacgttgtctgcgaaccatagacttcgatgcaggcggaaagacgccaataattatt-----atttgaatgtgatg |
2797920 |
T |
|
| Q |
110 |
tcaagttgaagtcaaaaaatggatggtttatttagattgtctccatatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtaca |
209 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2797921 |
tgaagttgaagtcaaaaaatggatggtttatttagattgtctccttatttattcttgtacatttattgagcatgcagaaattcgggccaaagatggtaca |
2798020 |
T |
|
| Q |
210 |
tatgatgtgaattgtgtgttgatgt |
234 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
2798021 |
tatgctgtgaattgtgtgttgatgt |
2798045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 3145868 - 3146002
Alignment:
| Q |
10 |
tcaacttaaagcgcatagacactaaaacgttggctgcgaactggaaacttgcatgcagaaggaaactctccaagaattgtcctggcatttgcatatgatg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
3145868 |
tcaacttaaagcgcatagacactaaaacgttggctgcgaaccggaaactttcatgcaggaggaaaccgtccaagaattgtcctggcatttgcatatgatg |
3145967 |
T |
|
| Q |
110 |
tcaagttgaagtc-aaaaaatggatggtttattta |
143 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
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| T |
3145968 |
tcaagttgaagtcaaaaaaatggatggtttattta |
3146002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 3146180 - 3146277
Alignment:
| Q |
137 |
ttatttagattgtctccatatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgt |
234 |
Q |
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||||||| ||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3146180 |
ttatttaaattgtctccgcatctaatcttgtacatttattgagcatggagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgt |
3146277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 2888406 - 2888309
Alignment:
| Q |
137 |
ttatttagattgtctccatatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgt |
234 |
Q |
| |
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||||||| ||||||| | || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2888406 |
ttatttaaattgtcttcgcatctaatcttgtacatttattgagcatggagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgt |
2888309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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