View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_1D_low_28 (Length: 238)
Name: NF0428_1D_low_28
Description: NF0428_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_1D_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 41957823 - 41957931
Alignment:
| Q |
123 |
ctatctggttagttaacgcaactctcattcagaaataaaatttaatctaaagtggcaaaatggaataatattcaacattaacttatcatatcctgatgtc |
222 |
Q |
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| T |
41957823 |
ctatctggttagttaacagagctctcattcagaaataaaatttaaactaaagtggcaaaatggaataatattcaacattaacttatcatatcctgatgtc |
41957922 |
T |
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| Q |
223 |
catctcatt |
231 |
Q |
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||||||| |
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| T |
41957923 |
tgtctcatt |
41957931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 41957715 - 41957756
Alignment:
| Q |
17 |
tcaaaatcacgttatggttcttaaaaaagaatgatggatatg |
58 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
41957715 |
tcaaaatcacgttatggttcttaaaaaagaatgatggatatg |
41957756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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