View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_1D_low_29 (Length: 238)
Name: NF0428_1D_low_29
Description: NF0428_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_1D_low_29 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 54505215 - 54504986
Alignment:
| Q |
6 |
gacatcaatgcaaatacgtaaacataatctagaaaattaagaacatcatcatagcgattgaaacttccaagaatccatggccagcaccaccacctttact |
105 |
Q |
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| T |
54505215 |
gacatcaatgcaaatacgtaaacataatctagaaaattaagaacatcatcatagcgattgaaacttccaagaatccatggccagcaccaccacctttact |
54505116 |
T |
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| Q |
106 |
accagatgaacttggggacggtgccggtgaaggtgactcgtctgaaggtgaagatgatggggccaatgaagctactgaatctgaaggtgacggtgccagt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
54505115 |
accagatgaacttggggacggtgccggtgaaggtgactcgtctgaaggtgaagatgacggtgccaatgaagctactgaatctgaaggtgacggtgccagt |
54505016 |
T |
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| Q |
206 |
gatggtgactctgagggtactgaaggcgacttt |
238 |
Q |
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||||||||||| ||||| ||||||||||||| |
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| T |
54505015 |
gatggtgactcggaggg---tgaaggcgacttt |
54504986 |
T |
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