View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0428_1D_low_4 (Length: 547)

Name: NF0428_1D_low_4
Description: NF0428_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0428_1D_low_4
NF0428_1D_low_4
[»] chr5 (2 HSPs)
chr5 (73-533)||(38815318-38815781)
chr5 (1-77)||(38815928-38816004)
[»] chr7 (2 HSPs)
chr7 (112-209)||(39079876-39079973)
chr7 (104-161)||(21048692-21048749)
[»] chr1 (1 HSPs)
chr1 (112-209)||(19810946-19811043)
[»] chr8 (1 HSPs)
chr8 (155-209)||(25971173-25971227)
[»] chr6 (2 HSPs)
chr6 (114-160)||(2115530-2115576)
chr6 (154-207)||(18286713-18286766)
[»] chr2 (2 HSPs)
chr2 (130-176)||(33455859-33455905)
chr2 (121-166)||(7252252-7252297)
[»] chr3 (1 HSPs)
chr3 (121-166)||(1348868-1348913)
[»] scaffold1034 (1 HSPs)
scaffold1034 (112-187)||(819-895)


Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 73 - 533
Target Start/End: Complemental strand, 38815781 - 38815318
Alignment:
Q  73 taagtagtagtgcttgtaagtttggacagtgcgcacctgacaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815781 taagtagtagtgcttgtaagtttggacagtgcgcacctgacaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtc 38815682  T
Q  173 tatcctagatctgttgttggactgcccgcattgtccatgcccctagcccaatttatgccaggttgtgaggca--gtgttggaaattttgccttgattgtg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  38815681 tatcctagatctgttgttggactgcccgcattgtccatgcccctagtccaatttatgccaggttgtgaggcagggtgttggaaattttgccttgattgtg 38815582  T
Q  271 gtctgcccctagccatcttaaatttggcttttaaatttccttcattgcagcttcgagcaccttaattttgctgggtgtgagaggctgggttagtcctaca 370  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815581 gtcttcccctagccatcttaaatttggcttttaaatttccttcattgcagcttcgagcaccttaattttgctgggtgtgagaggctgggttagtcctaca 38815482  T
Q  371 cagcctagagatctaaatagccgtgaagggcctc-ttgtgtggtgttgtgttagttgtgatttagtttagtggggcctgagaattttatttgcttttgtc 469  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38815481 cagcctagagatctaaatagccgtgaagggcctctttgtgtggtgttgtgttagttttgatttagtttagtggggcctgagaattttatttgcttttgtc 38815382  T
Q  470 taataggaagtggattgttctgtggcttcctgtggattgtttggtgagcctagcttggtgatgt 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38815381 taataggaagtggattgttctgtggcttcctgtggattgtttggtgagcctagcttggttatgt 38815318  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 38816004 - 38815928
Alignment:
Q  1 tcgcttccaacaccttcattgtgttggacttgagaggtcgggtttagtcccgcatgaccaagagacatggcctaagt 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816004 tcgcttccaacaccttcattgtgttggacttgagaggtcgggtttagtcccgcatgaccaagagacatggcctaagt 38815928  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 39079973 - 39079876
Alignment:
Q  112 acaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtcca 209  Q
    |||||||| ||||||| |||| | |||| | ||||||||| | |||||||  ||| ||| ||||||||||||||| ||||| || || ||||||||||    
T  39079973 acaagccggttttgtaaggtttagttaggcccaacccaaattttaagatggcatcagagcctatcctagatctgtcgttgggcttcctgcattgtcca 39079876  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 21048749 - 21048692
Alignment:
Q  104 cgcacctgacaagccgattttgtagggttgaattagactcaacccaaactctaagatg 161  Q
    ||||||| ||||||| ||||| || |||||| |||| ||||||||||| |||||||||    
T  21048749 cgcaccttacaagccaattttataaggttgagttaggctcaacccaaattctaagatg 21048692  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 19811043 - 19810946
Alignment:
Q  112 acaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtcca 209  Q
    |||||||| ||||||| |||||| |||| |  |||||||| | ||||||| |||| ||| |||||||||||||||||  || || ||||||| |||||    
T  19811043 acaagccggttttgtaaggttgacttaggccgaacccaaattttaagatggtatcagagactatcctagatctgttgcagggcttcccgcatcgtcca 19810946  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 25971173 - 25971227
Alignment:
Q  155 taagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtcca 209  Q
    |||||||  ||| ||| |||||||||||||||||||||||| ||||||| |||||    
T  25971173 taagatggaatcagagcctatcctagatctgttgttggacttcccgcatcgtcca 25971227  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 2115530 - 2115576
Alignment:
Q  114 aagccgattttgtagggttgaattagactcaacccaaactctaagat 160  Q
    |||||| |||||||||||| |||||||||||||||||| | ||||||    
T  2115530 aagccggttttgtagggttcaattagactcaacccaaattttaagat 2115576  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 18286713 - 18286766
Alignment:
Q  154 ctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtc 207  Q
    ||||||||||||| ||| ||||| |||||||||||| || || |||||||||||    
T  18286713 ctaagatgatatcagagcctatcgtagatctgttgtcgggcttcccgcattgtc 18286766  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 33455859 - 33455905
Alignment:
Q  130 gttgaattagactcaacccaaactctaagatgatatcggagtctatc 176  Q
    ||||| |||||||||||||||| ||||||||| |||| |||||||||    
T  33455859 gttgagttagactcaacccaaattctaagatggtatcagagtctatc 33455905  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 7252252 - 7252297
Alignment:
Q  121 ttttgtagggttgaattagactcaacccaaactctaagatgatatc 166  Q
    |||||||||||||| |||| ||||||||||| ||||||||| ||||    
T  7252252 ttttgtagggttgagttaggctcaacccaaattctaagatggtatc 7252297  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 1348913 - 1348868
Alignment:
Q  121 ttttgtagggttgaattagactcaacccaaactctaagatgatatc 166  Q
    ||||||| |||||| |||||||||||||||| | ||||||||||||    
T  1348913 ttttgtatggttgagttagactcaacccaaattttaagatgatatc 1348868  T

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Target: scaffold1034 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1034
Description:

Target: scaffold1034; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 819 - 895
Alignment:
Q  112 acaagccgattttgta-gggttgaattagactcaacccaaactctaagatgatatcggagtctatcctagatctgtt 187  Q
    |||||| ||||||||| |||||||||||| |  ||| |||| |||||||||||||| ||||||| |  |||||||||    
T  819 acaagctgattttgtaagggttgaattaggcctaactcaaattctaagatgatatcagagtctaactaagatctgtt 895  T

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