View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_1D_low_40 (Length: 201)
Name: NF0428_1D_low_40
Description: NF0428_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_1D_low_40 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 16438403 - 16438211
Alignment:
| Q |
8 |
ttggtgttgttgggttgggagtttgaattttaatggtgattttgagcgtggtggtgaattttggttgaagtgatgatgacgagtttgcgggttgattcca |
107 |
Q |
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| T |
16438403 |
ttggtgttgttgggttagaagtttgaattttaatggtgattttgagcgtggtggtgaattttggttgaagtgatgatgaggagtttgtgggttggttcca |
16438304 |
T |
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| Q |
108 |
tttttgggggtttgttttgtttctctttctttatctgctctttgtcaccttcgatttggatcaatctccactgtcgctgccatttttgtgttga |
201 |
Q |
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| T |
16438303 |
tttttgagggtttgttttgtttttctttctttgtctac-ctttgttaccttcgatttggatccatctccaaagtcgctgccatttttgtgttga |
16438211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 39041807 - 39041731
Alignment:
| Q |
8 |
ttggtgttgttgggttgggagtttgaattttaatggtgattttgagcgtggtggtgaattttggttgaagtgatgat |
84 |
Q |
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| T |
39041807 |
ttggtgatgttggactgggagttggaatgttaattgtgatcttgtgtgtggtggtgaattttggttgtggtgatgat |
39041731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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