View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_1D_low_7 (Length: 476)
Name: NF0428_1D_low_7
Description: NF0428_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_1D_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 28922054 - 28922525
Alignment:
| Q |
1 |
acatttgaaagaagaaaataaatctttcatccacttatagacttaatcatcttactggattgttgcacagtatccccttttagtgaaacaaacagttcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28922054 |
acatttgaaagaagaaaataaatctttcatccacttatagacttaatcatcttactggattgttgcacagtatccccttttagtgaaacaaacagttcct |
28922153 |
T |
|
| Q |
101 |
tggtgaaggtatcaacatgtgataacaactgctcagcaaactctttcttggcaggatcctacnnnnnnntaatactaaaaatcagttttcttaataaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
28922154 |
tggtgaaggtatcaacatgtgataacaactgctcagcaaactctttcttggcaggatcctacaaaaaaattatactaaaaatcagttttcttaataaaaa |
28922253 |
T |
|
| Q |
201 |
-ggtttcaaatttcaaacatgaggtagggcaccacatg-------------cagtagttgcaattgcaacgtaatcacaattgaccatggtctcatcaac |
286 |
Q |
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| T |
28922254 |
aggtttcaaatttcaaacatgagctagggcaccacataaaggtttaggtttcagtagttgcaattgcaacgtaatcacaattgaccatggtctcatcaac |
28922353 |
T |
|
| Q |
287 |
cttaattgacctcacagtatcaatgatcacaattcgactgtgatttaaaaccttgcttaacatcaacagtccattgcctgtaaggtgggaactgcccccc |
386 |
Q |
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| T |
28922354 |
cttaattgacctcacagtatcaatgatcacaattcgactgtgatttaaaaccttgcttaacatcaatagtccattgcctgtaaggtgggaactgcccccc |
28922453 |
T |
|
| Q |
387 |
tcttataaactcattttcagggtttaacccatccaatgcaagactcataacacacgctctcactagttgatg |
458 |
Q |
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| T |
28922454 |
tcttataaactcattttcagggtttaacccatgcaatgcaagactcgtaacacacgctctcactagttgatg |
28922525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 28909771 - 28909847
Alignment:
| Q |
261 |
tcacaattgaccatggtctcatcaaccttaattgacctcacagtatcaatgatcacaattcgactgtgatttaaaac |
337 |
Q |
| |
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||||||| |||| | ||||||| | ||||||||||||||||| |||||| ||||||||| |||||||||||||||| |
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| T |
28909771 |
tcacaatagaccgtagtctcattagccttaattgacctcacaatatcaaggatcacaatatgactgtgatttaaaac |
28909847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 28914544 - 28914599
Alignment:
| Q |
102 |
ggtgaaggtatcaacatgtgataacaactgctcagcaaactctttcttggcaggat |
157 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||| |
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| T |
28914544 |
ggtgaatgtatcaacatgggataacaactgctcaccgaactctttcttggcaggat |
28914599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 28909585 - 28909645
Alignment:
| Q |
101 |
tggtgaaggtatcaacatgtgataacaactgctcagcaaactctttcttggcaggatccta |
161 |
Q |
| |
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||||||| ||||||||||| |||| ||||| |||| | | ||||||||||||||||||||| |
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| T |
28909585 |
tggtgaatgtatcaacatgggatagcaactactcaccgagctctttcttggcaggatccta |
28909645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 40288676 - 40288736
Alignment:
| Q |
100 |
ttggtgaaggtatcaacatgtgataacaactgctcagcaaactctttcttggcaggatcct |
160 |
Q |
| |
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|||||||| ||||||||||| || | |||||| ||| ||||||||||||| |||||||||| |
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| T |
40288676 |
ttggtgaatgtatcaacatgagaaatcaactgatcaccaaactctttctttgcaggatcct |
40288736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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