View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_1D_low_8 (Length: 473)
Name: NF0428_1D_low_8
Description: NF0428_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_1D_low_8 |
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| [»] chr2 (11 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 26 - 473
Target Start/End: Original strand, 38003506 - 38003950
Alignment:
| Q |
26 |
tatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaacaaactta |
125 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38003506 |
tatgctttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaacaaactta |
38003605 |
T |
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| Q |
126 |
aggatgagaagaaggccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgattaatttgtacatagtgatgtta |
225 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38003606 |
aggatgagaagaaggcaaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgattaatttgtacatagtgatatta |
38003705 |
T |
|
| Q |
226 |
gattagattaattatgtaaagtttgcaatatcaaactacagtactattattattcaatgaggaaagtttattcttcacatatctatgtttctcagtgcat |
325 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38003706 |
gattagattatttatgtaaagtttgtaatatcaaactacagtactattattattcaatgaggaaagtttattcttcacatatctatgtttcaaagtgcat |
38003805 |
T |
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| Q |
326 |
acccgatcagtattgaatttggtgagtgtgtgtattacgatgattagatggtaatggtattttgattacatgacacatattgcttttttatcacacaaca |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38003806 |
acccgatcagtattgaatttggtgagtgtgtgtattacgatgattagatggtaatggtattttgattacatgacaca---tgcttttttatcacacaaca |
38003902 |
T |
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| Q |
426 |
ctaaatgaaaattggatagattagattctaagttgtgggttgaatcca |
473 |
Q |
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| T |
38003903 |
ctaaatgaaaattggacagattagattctaagttgtgggttgaatcca |
38003950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 23 - 348
Target Start/End: Original strand, 38031754 - 38032073
Alignment:
| Q |
23 |
aactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaacaaac |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38031754 |
aactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaacaaac |
38031853 |
T |
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| Q |
123 |
ttaaggatgagaagaaggccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgattaatttgtacatagtgatg |
222 |
Q |
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| T |
38031854 |
ttaaggatgagaagaaggccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgctggggtcctaattgattaacttatacatagtgatg |
38031953 |
T |
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| Q |
223 |
ttagattagattaattatgtaaagtttgcaatatcaaactacagtactattattattcaatgaggaaagtttattcttcacatatctatgtttctcagtg |
322 |
Q |
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| T |
38031954 |
ttagattatattaattatgtaaattttgtaatcttaaacggc------aatattattcaatgaggaaagtttattcttcacatatctatgtttctcagtg |
38032047 |
T |
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| Q |
323 |
catacccgatcagtattgaatttggt |
348 |
Q |
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|||||||||||||||||||||||||| |
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| T |
38032048 |
catacccgatcagtattgaatttggt |
38032073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 23 - 339
Target Start/End: Original strand, 38025014 - 38025340
Alignment:
| Q |
23 |
aactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaacaaac |
122 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38025014 |
aactatgctttaagacaagctcaacaacaccttaaaaaccgtgctaaatcaatgtctcaagcaaagaatttctcttcttcttcatttcttgctaccaaat |
38025113 |
T |
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| Q |
123 |
ttaaggatgagaagaaggccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgattaatttg------------ |
210 |
Q |
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| T |
38025114 |
ttaaggatgagaagaagtccaaacaagcagaggagtctctaaggactgtcatgtacttgagctgctggggtcctaattgattaatttgtaaatataatta |
38025213 |
T |
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| Q |
211 |
------tacatagtgatgttagattagattaattatgtaaagtttgcaatatcaaactacagtactattattattcaatgaggaaagtttattcttcaca |
304 |
Q |
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||||||||||||||||||||||| || ||||||||||||| |||||||||| | | |||||||||||||||||||||||||||| || |
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| T |
38025214 |
ttatattacatagtgatgttagattagataaactatgtaaagtttgtaatatcaaacggc------aatattattcaatgaggaaagtttattctt--ca |
38025305 |
T |
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| Q |
305 |
tatctatgtttctcagtgcatacccgatcagtatt |
339 |
Q |
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| T |
38025306 |
tatctttgtttctcagtgcatacccgatcagtatt |
38025340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 38028451 - 38028501
Alignment:
| Q |
150 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaatt |
200 |
Q |
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| T |
38028451 |
cagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaatt |
38028501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 38043091 - 38043141
Alignment:
| Q |
150 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaatt |
200 |
Q |
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| T |
38043091 |
cagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaatt |
38043141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 38067438 - 38067488
Alignment:
| Q |
150 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaatt |
200 |
Q |
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||||||| |||||||||| |||||||||||||| |||||||||||||||| |
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| T |
38067438 |
cagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaatt |
38067488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 2912477 - 2912525
Alignment:
| Q |
155 |
gagtctttgaggactgtcatgtacttgagctgttggggtcccaattgat |
203 |
Q |
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|||||| | ||||||||||||||||||||||| |||||||| ||||||| |
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| T |
2912477 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
2912525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 38046599 - 38046647
Alignment:
| Q |
150 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaa |
198 |
Q |
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| T |
38046599 |
cagaggaatctttgagaacagtcatgtacttaagctgttggggtcccaa |
38046647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 38022056 - 38022113
Alignment:
| Q |
141 |
ccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaa |
198 |
Q |
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|||| ||| ||||||| |||||||| |||||||||| |||||| || ||||||||||| |
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| T |
38022056 |
ccaagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa |
38022113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 38045095 - 38045148
Alignment:
| Q |
152 |
gaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgatta |
205 |
Q |
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||||| |||||||||| |||||||||||||| || ||||||||||||| |||| |
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| T |
38045095 |
gaggaatctttgaggaaggtcatgtacttgagttgctggggtcccaattaatta |
38045148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 38069110 - 38069155
Alignment:
| Q |
150 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcc |
195 |
Q |
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||||||| |||||||| || ||||||||||| |||||||||||||| |
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| T |
38069110 |
cagaggaatctttgagaacagtcatgtacttaagctgttggggtcc |
38069155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 16005483 - 16005531
Alignment:
| Q |
152 |
gaggagtctttgaggactgtcatgtacttgagctgttggggtcccaatt |
200 |
Q |
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|||||||| |||||||| ||||||||||| ||||||||||||||||||| |
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| T |
16005483 |
gaggagtcattgaggacggtcatgtacttaagctgttggggtcccaatt |
16005531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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