View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_1D_low_9 (Length: 451)
Name: NF0428_1D_low_9
Description: NF0428_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_1D_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 25 - 431
Target Start/End: Complemental strand, 28921816 - 28921410
Alignment:
| Q |
25 |
aaatcctcttgctgatcaggttgatattgcttatattccctttgttgaaagattccatattgttcttgctgaggttttcaaacatgacattacagaagga |
124 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28921816 |
aaatcctcgtgctgatcaggttgatattgcttatattccctttgttgaaagattccatattgttcttgctgaggttttcaaacatgacattacagaagga |
28921717 |
T |
|
| Q |
125 |
aggcctaaacttgcaacatggattgaggtacactctttagaagaactacttgtgtagaatttcttaccttgattatgaggattgtactagtttgttttcg |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28921716 |
aggcctaaacttgcaacatggattgaggtacactctttagaagaactacttgtgtagaatttcttaccttgattatgaggattgtactagtttgttttcg |
28921617 |
T |
|
| Q |
225 |
tctgtatgcatttaccataatcttcaatctaaactagaagaaaatatctccattagcttagcaactcttaacagataagataataatgcatttgaataaa |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28921616 |
tctgtatgcatttaccataatcttcaatctaaactagaagaaaatatctccattagcttagcaactcttaacagataagataataatgcatttgaagaaa |
28921517 |
T |
|
| Q |
325 |
gaagcagaactacaaacttttcagtcataagagagattcatctgtgaatgaacatgtcatttttgtaggagctgaacaagattgatgcttatacacagac |
424 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28921516 |
gaagcagaactacaaacttttcggtcataagagagattcatctgtgaatgaacatgtcatttttgtaggagctgaacaaaattgatgcttatacacagac |
28921417 |
T |
|
| Q |
425 |
aagagtg |
431 |
Q |
| |
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||||||| |
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| T |
28921416 |
aagagtg |
28921410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 28909219 - 28909037
Alignment:
| Q |
37 |
tgatcaggttgatattgcttatattccctttgttgaaagattccatattgttcttgctgaggttttcaaacatgacattacagaaggaaggcctaaactt |
136 |
Q |
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|||||||||||||||||| || ||||| ||||||||||||||| || |||| ||||||||||| ||||| || |||| || ||||||| |||||||||| |
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| T |
28909219 |
tgatcaggttgatattgcctacattccttttgttgaaagattcgatgttgtccttgctgaggtgttcaagcacaacatcaccgaaggaaagcctaaactt |
28909120 |
T |
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| Q |
137 |
gcaacatggattgaggtacactctttagaagaactacttgtgtagaatttcttaccttgattatgaggattgtactagtttgttttc |
223 |
Q |
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|||||||||||||||||||| ||| ||||| |||||||||||||||||||| | | ||||||| ||||||||| |||| |||| |
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| T |
28909119 |
gcaacatggattgaggtaca----ttacaagaagcacttgtgtagaatttcttacttcgtttatgagaattgtactactttgctttc |
28909037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 28913896 - 28913779
Alignment:
| Q |
37 |
tgatcaggttgatattgcttatattccctttgttgaaagattccatattgttcttgctgaggttttcaaacatgacattacagaaggaaggcctaaactt |
136 |
Q |
| |
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||||||||| |||||||| || ||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||| |
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| T |
28913896 |
tgatcaggtggatattgcctacattccatttgttgaaagatttcatattgttcttgccgaggtgttcaagcatgacatcacagaaggaaggcctaaactt |
28913797 |
T |
|
| Q |
137 |
gcaacatggattgaggta |
154 |
Q |
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|||||||||||||||||| |
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| T |
28913796 |
gcaacatggattgaggta |
28913779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 322 - 431
Target Start/End: Complemental strand, 28908954 - 28908845
Alignment:
| Q |
322 |
aaagaagcagaactacaaacttttcagtcataagagagattcatctgtgaatgaacatgtcatttttgtaggagctgaacaagattgatgcttatacaca |
421 |
Q |
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||||||||| |||||| | | ||||| |||| ||||||| || |||||||||| |||| ||||||||||| |||||||||||||||||||||| || |
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| T |
28908954 |
aaagaagcaaaactactcattgttcagacatataagagattgatttgtgaatgaaaatgtttcttttgtaggagttgaacaagattgatgcttatactca |
28908855 |
T |
|
| Q |
422 |
gacaagagtg |
431 |
Q |
| |
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|||||||||| |
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| T |
28908854 |
gacaagagtg |
28908845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 431
Target Start/End: Complemental strand, 28913515 - 28913413
Alignment:
| Q |
332 |
aactacaaacttttcagtcataagagagattcatct---gtgaatgaacatgtcatttttgtaggagctgaacaagattgatgcttatacacagacaaga |
428 |
Q |
| |
|
|||||| |||| | ||| |||||||||||||||| | || |||||| |||| |||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
28913515 |
aactactaactctgcagacataagagagattcattttttgttaatgaaaatgttttttttgtaggagttgaacaagattggtgcttatacacagacaaga |
28913416 |
T |
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| Q |
429 |
gtg |
431 |
Q |
| |
|
||| |
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| T |
28913415 |
gtg |
28913413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 40288292 - 40288173
Alignment:
| Q |
37 |
tgatcaggttgatattgcttatattccctttgttgaaagattccatattgttcttgctgaggttttcaaacatgacattacagaaggaaggcctaaactt |
136 |
Q |
| |
|
|||| |||| |||||||| ||| |||| |||||||||||||||||||| || || ||||||| ||||| ||||| || ||||||||||||||||||||| |
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| T |
40288292 |
tgattaggtggatattgcctatgttccatttgttgaaagattccatatagtcttttctgaggtgttcaagcatgatataacagaaggaaggcctaaactt |
40288193 |
T |
|
| Q |
137 |
gcaacatggattgaggtaca |
156 |
Q |
| |
|
||| |||||||||||||||| |
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| T |
40288192 |
gcagcatggattgaggtaca |
40288173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 427
Target Start/End: Complemental strand, 40287941 - 40287905
Alignment:
| Q |
391 |
aggagctgaacaagattgatgcttatacacagacaag |
427 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
40287941 |
aggagcttaacaagattgatgcttatacacagacaag |
40287905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 1973226 - 1973273
Alignment:
| Q |
384 |
tttttgtaggagctgaacaagattgatgcttatacacagacaagagtg |
431 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1973226 |
tttttgtgggagctgaacaagattgatgcttatacacagacaagagtg |
1973273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 1973058 - 1973119
Alignment:
| Q |
227 |
tgtatgcatttaccataatcttcaatctaaactagaagaaaatatctccattagcttagcaa |
288 |
Q |
| |
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|||||| ||| |||||| ||||||||||||| |||| |||||| | ||||||||||| |||| |
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| T |
1973058 |
tgtatgtattcaccatagtcttcaatctaaagtagatgaaaatttatccattagcttcgcaa |
1973119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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