View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0428_2D_high_9 (Length: 255)
Name: NF0428_2D_high_9
Description: NF0428_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_2D_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4875799 - 4875564
Alignment:
| Q |
1 |
acgtagcagcacattaatattcatatatattttaagacaaggtcagtagtattaattacaggtttgtttagaaagnnnnnnnnnnctagattcatctagt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4875799 |
acgtagcaggacattaatattcatatatattttaagagaaggtcagtagtattaattacaggtttgtttagaaa----aaaaaaactagattcatctagt |
4875704 |
T |
|
| Q |
101 |
aatttgtataagggctaatatgtacgaataaaactttttctcaatgtgtgtttattattaaggatggagggagtaacatcaatgtcttattattgacaan |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4875703 |
aatttgtataagggctaatatgtacgaataaaactttttctcaatgtgtgtttattattaaggatggagggagtaacatcaatgtcttattattgacaat |
4875604 |
T |
|
| Q |
201 |
nnnnnnggtcatgtataaacaacaggtacaaagatgatgt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
4875603 |
ttttttggtcatgtataaacaacaggtacaaagatgatgt |
4875564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 4776970 - 4776937
Alignment:
| Q |
207 |
ggtcatgtataaacaacaggtacaaagatgatgt |
240 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
4776970 |
ggtcatgtacaaacaacaggtacaaagatgatgt |
4776937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 4890368 - 4890335
Alignment:
| Q |
207 |
ggtcatgtataaacaacaggtacaaagatgatgt |
240 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
4890368 |
ggtcatgtacaaacaacaggtacaaagatgatgt |
4890335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 4995993 - 4996026
Alignment:
| Q |
207 |
ggtcatgtataaacaacaggtacaaagatgatgt |
240 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
4995993 |
ggtcatgtacaaacaacaggtacaaagatgatgt |
4996026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 185 times since January 2019
Visitors: 3259