View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_2D_low_10 (Length: 309)
Name: NF0428_2D_low_10
Description: NF0428_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_2D_low_10 |
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| [»] scaffold0512 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 22336090 - 22336386
Alignment:
| Q |
1 |
tctacttcttattgtaactaatagtggtatgttatttttcacaccattttctaattaatcttattcacaatattttatcaccttttggcttttagtaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| |
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| T |
22336090 |
tctacttcttattgtaactaatagtggtatgttatttttcacaccattttctaattaatcttattcacgatattttatcatcttttgg-ttttagtaaca |
22336188 |
T |
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| Q |
101 |
ttatttttcttc----acattgcagtcgaaattcccgaaactccttgtgttagtgacgatgagtgtccatattataatccatctctttatgcgaggtgca |
196 |
Q |
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| T |
22336189 |
tttattttcttatttgacattgcagttgaaattcctgaaactccttgtgagagtgacgctgaatgtccatattatagtccatctctttatgcgaggtgca |
22336288 |
T |
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| Q |
197 |
ttgatggattttgtacgttgtttttgtcctaag----tatataattttatttctgcgtcctaatgtttgtatttttatactttacctgaactactgat |
290 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22336289 |
ttgatggattttgtacgttgtttttgtcctaagtatatatataattttatttctgcgtcctaatgtttgtatttttatactttacctgaactactgat |
22336386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 22321877 - 22321927
Alignment:
| Q |
6 |
ttcttattgtaactaatagtggtatgttatttttcacaccattttctaatt |
56 |
Q |
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| T |
22321877 |
ttcttgttgtaaccaatggtggtatgtcatttttcataccattttctaatt |
22321927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0512 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0512
Description:
Target: scaffold0512; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 10707 - 10651
Alignment:
| Q |
27 |
gtatgttatttttcacaccattttctaattaatcttattcacaatattttatcacct |
83 |
Q |
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|||||| ||||||||||||||||| |||| ||||||| |||| ||||||||||||| |
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| T |
10707 |
gtatgtcatttttcacaccattttataatctatcttatacacagtattttatcacct |
10651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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