View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_2D_low_11 (Length: 284)
Name: NF0428_2D_low_11
Description: NF0428_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_2D_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 27918512 - 27918245
Alignment:
| Q |
1 |
aacaacaagagtccccttctgtctgaagccatactcctcccaagcatcatcaagcaatcccaaaaaagcaggatcagttaggtaatctaacccaacaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27918512 |
aacaacaagagtccccttctgtctgaagccatactcctcccaagcatcatcaagcaatcccaaaaaagcaggatcagttaggtaatctaacccaacaata |
27918413 |
T |
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| Q |
101 |
aaccttctagtttctaaacccttctttgcaagaacagcaaagtaacctttcataacatcatcagcaagctcgtgacctgtggttgtggcatgatcttcac |
200 |
Q |
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| T |
27918412 |
aatcttctagtttctaaacccttctttgcaagaacagcaaagtaacctttcataacatcatcagcaagctcgtgacctgtggttgtggcatgatcttcac |
27918313 |
T |
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| Q |
201 |
tccagtagctcaatgcatgctttcttggtacaaagaccgataaactcttttgtaccttctcaacaaat |
268 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27918312 |
tccagtagctcaatgcatgctttcttggtacaaagactgataaactcttttgtaccttctcaacaaat |
27918245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 27896402 - 27896138
Alignment:
| Q |
1 |
aacaacaagagtccccttctgtctgaagccatactcctcccaagcatcatcaagcaatcccaaaaaagcaggatcagttaggtaatctaacccaacaata |
100 |
Q |
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|||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27896402 |
aacaacaagagttcccttctgtctaaaaccatactcctcccaagcatcatcaagcaatcccaaaaaagcaggatcagttaagtaatctaacccaacaata |
27896303 |
T |
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| Q |
101 |
aaccttctagtttctaaacccttctttgcaagaacagcaaagtaacctttcataacatcatcagcaagctcgtgacctgtggttgtggcatgatcttcac |
200 |
Q |
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| T |
27896302 |
aaccttctagtttctacacccttctttgcaagaacagcaaagtaacctttcgtaacatcatcagcaagatc---acttgtggttgtggcatgatcttcat |
27896206 |
T |
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| Q |
201 |
tccagtagctcaatgcatgctttcttggtacaaagaccgataaactcttttgtaccttctcaacaaat |
268 |
Q |
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| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
27896205 |
ttatgtagctcaatgcatgctttcttggtacaaagactgataaactcttttgtaccttcccaacaaat |
27896138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 27930066 - 27929823
Alignment:
| Q |
1 |
aacaacaagagtccccttctgtctgaagccatactcctcccaagcatcatcaagcaatcccaaaaaagcaggatcagttaggtaatctaacccaacaata |
100 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27930066 |
aacaacaagagttcccttctgtctaaaaccatactcctcccaagcatcatcaagcaatcccaaaaaagcaggatcagttaagtaatctaacccaacaata |
27929967 |
T |
|
| Q |
101 |
aaccttctagtttctaaacccttctttgcaagaacagcaaagtaacctttcataacatcatcagcaagctcgtgacctgtggttgtggcatgatcttcac |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||| | | |||||||||||||||||| |
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| T |
27929966 |
aaccttctagtttcttcacccttctttgcaagaacagcaaagtaacctttcatgacatcatcggcaacccc---------agttgtggcatgatcttcat |
27929876 |
T |
|
| Q |
201 |
tccagtagctcaatgcatgctttcttggtacaaagaccgataaactcttttgt |
253 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
27929875 |
tccagtagctcaatgcatgctttctgggtacaaagactgataaactcttttgt |
27929823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 27923691 - 27923446
Alignment:
| Q |
1 |
aacaacaagagtccccttctgtctgaagccatactcctcccaagcatcatcaagcaatcccaaaaaagcaggatcagttaggtaatctaacccaacaata |
100 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
27923691 |
aacaacaagagttcccttctgcctgaaaccatattcctccgaagcatcatcaagcaatcccaaaaaagcaggatcagttaagtaatctaatccaacaata |
27923592 |
T |
|
| Q |
101 |
aaccttctagtttctaaacccttctttgcaagaacagcaaagtaacctttcataacatcatcagcaagctcgtgacctgtggttgtggcatgatcttcac |
200 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||| |||| | | | ||||||||||||||||| |
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| T |
27923591 |
aaccttctagtttcctcacccttccttgcaagaacagcaaagtaacctttcatgacatcatcggcaacccc---------agctgtggcatgatcttcac |
27923501 |
T |
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| Q |
201 |
tccagtagctcaatgcatgctttcttggtacaaagaccgataaactcttttgtac |
255 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
27923500 |
tccagtagctcaatgcatgctttctcggtacaaagagtgataaactcttttgtac |
27923446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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