View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_2D_low_13 (Length: 272)
Name: NF0428_2D_low_13
Description: NF0428_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_2D_low_13 |
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| [»] scaffold0223 (1 HSPs) |
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| [»] scaffold0665 (1 HSPs) |
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| [»] scaffold0356 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 15556817 - 15556576
Alignment:
| Q |
22 |
ccgcaggggtggaaggaggagcaagctctgcctgccagtcaaacatgactaggcaagcagaactaccaatcagctagggcaaaacaagctagatagggcg |
121 |
Q |
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| T |
15556817 |
ccgcaggggtggaaggaggagcaagctctgcctgccagtcaaacatgactaggcacacagaactaccaatcaactagggcaaaacgagctacatagggcg |
15556718 |
T |
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| Q |
122 |
gagtggtacaattgggaacgcaaccaaaccttagcagagaaccatcagccaaaaatcgcccttttcactttatataaaaaccatagtct----nnnnnnn |
217 |
Q |
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| T |
15556717 |
gagtggtacaattgggaacgcggccaaaccctagcagagaaccatcagccaaaaatcgcccttttcgctttatataaaaaccatagtttaaaaaaaaaaa |
15556618 |
T |
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| Q |
218 |
nnnccatagtttaatatttgcatcgcactcgttgcgaatttt |
259 |
Q |
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| T |
15556617 |
aaaccatagtttaatatttgcatcgcactcgttgcgaatttt |
15556576 |
T |
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Target: scaffold0223 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 15147 - 15225
Alignment:
| Q |
22 |
ccgcaggggtggaaggaggagcaagctctgcctgccagtcaaacatgactaggcaagcagaactaccaatcagctaggg |
100 |
Q |
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| T |
15147 |
ccgcatggatggaagaaggagcaagctccgcctgccagtcaaacatgaccaggcacgcagaactaccaatcaactaggg |
15225 |
T |
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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 24025558 - 24025492
Alignment:
| Q |
18 |
atcaccgcaggggtggaaggaggagcaagctctgcctgccagtcaaacatgactaggcaagcagaac |
84 |
Q |
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| T |
24025558 |
atcacagcaagggtggaaggaggagcaagctcctcctgccagtcaaacatgaccaggcaagcagaac |
24025492 |
T |
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Target: scaffold0665 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 5151 - 5091
Alignment:
| Q |
24 |
gcaggggtggaaggaggagcaagctctgcctgccagtcaaacatgactaggcaagcagaac |
84 |
Q |
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| T |
5151 |
gcaggggtggagggaggagcaagctccgcctgccagtcaaacatgacccggcaagcagaac |
5091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 7773 - 7713
Alignment:
| Q |
24 |
gcaggggtggaaggaggagcaagctctgcctgccagtcaaacatgactaggcaagcagaac |
84 |
Q |
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| T |
7773 |
gcaggggtggagggaggagcaagctccgcctgccagtcaaacatgacccggcaagcagaac |
7713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 24055388 - 24055331
Alignment:
| Q |
27 |
ggggtggaaggaggagcaagctctgcctgccagtcaaacatgactaggcaagcagaac |
84 |
Q |
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| T |
24055388 |
ggggtgggaggaggaccaagctccgcccgccagtcaaacatgactaggcaagctgaac |
24055331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 97720 - 97676
Alignment:
| Q |
36 |
ggaggagcaagctctgcctgccagtcaaacatgactaggcaagca |
80 |
Q |
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| T |
97720 |
ggaggcgcaagctctgcctgccagtcaaacatgactaggcgagca |
97676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 22393472 - 22393536
Alignment:
| Q |
18 |
atcaccgcaggggtggaaggaggagcaagctctgcctgccagtcaaacatgactaggcaagcaga |
82 |
Q |
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| T |
22393472 |
atcacagcaggtatggcaggaggtgcaagctccgcctgccagtcaaacatgaccaggcaagcaga |
22393536 |
T |
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