View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_2D_low_18 (Length: 258)
Name: NF0428_2D_low_18
Description: NF0428_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_2D_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 3810944 - 3811170
Alignment:
| Q |
16 |
caacaaataattaaacaatgaccataaaaacattaaaagaatgtggaacataacaggtacccttaaaaagaaaataaagacaataaattaaacgattaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3810944 |
caacaaataattaaacaatgaccataaaaacattaaaagaatgtggaacataacaggtacccttaaaaagaaaataaaaacaataaattaaacgattaac |
3811043 |
T |
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| Q |
116 |
cacaaattcattactcttaaaagggtttgttatcggttgaagttatcaatatccatgaaaattacattaatgagctatattccattgaaacacatcttca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3811044 |
cacaaattcattactcttaaaagggtttgttatcggttgaagttatcaatatccatgaaaattacattaatgagctatattccattgaaacacatcttca |
3811143 |
T |
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| Q |
216 |
gcacatgcataacctcacgcttcacag |
242 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3811144 |
gcacatgcataacctcacgcttcacag |
3811170 |
T |
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