View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_2D_low_6 (Length: 550)
Name: NF0428_2D_low_6
Description: NF0428_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_2D_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 2 - 530
Target Start/End: Original strand, 8436672 - 8437200
Alignment:
| Q |
2 |
caaacacatattcttagattgagcagtcttttgccaacctaccaagttgatacctgagttgttgaaatcctttcaaattaagttgcaagttttttaactt |
101 |
Q |
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| T |
8436672 |
caaacacatattcttagattgagcagtcttttgccaacctaccaagttgatacctgagttgttgaaatcctttcaaattaagttgcaagttttttaactt |
8436771 |
T |
|
| Q |
102 |
catcaataatgtcttttctttggatgtggtcgagaagatactccaatttcgtctctagaaattttttggttaatgaccaactcttttggactgccgattc |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8436772 |
catcaataatgtcttttctttggatgtggtcgagaagatactccaatttcgtctctagaaatttcttggttaatgaccaactcttttggactgccgattc |
8436871 |
T |
|
| Q |
202 |
tagtgtaaagtacaccgtcaagttcctgtatccactttatttagagaagtttttcaatggtaaccaatatcatgtgttgggagattggaagaggctttgg |
301 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8436872 |
tagtgt-aagtacaccgtcaagttcctgtatccactttatttagagaagtttttgaatggtaaccaatatcatgtgttgggagattggaagaggctttgg |
8436970 |
T |
|
| Q |
302 |
tgtgttaaagtaccccttaaggttcgtaacttaaattcaagaattagtcgagggtgcttacaaactagagtgagacttcaaattcgtagaattcaatgcc |
401 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8436971 |
tgtgttaaagtaccccttaaggttcgtaacttaaattcaagaattagtcgagggtgcttacaaactagagtgagacttcaaattcgtagaattcaatgcc |
8437070 |
T |
|
| Q |
402 |
cc-aaatattgctatttttgtgaagatggtttggagaatgatctgcaagtgttggtttggtgcagctttggcaggaaggtgtggtctactatggacaatt |
500 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437071 |
ccaaaatattgctatttttgtgaagatggtttggagaatgatctgcaagtgttggtttggtgcagctttggcaggaaggtgtggtctactatggacaatt |
8437170 |
T |
|
| Q |
501 |
tgttgatgtgtatacgtcttggattcctaa |
530 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
8437171 |
tgttgatgtgtatacgtcttggattcctaa |
8437200 |
T |
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