View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_high_4 (Length: 239)
Name: NF0428_high_4
Description: NF0428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 24928913 - 24928792
Alignment:
| Q |
18 |
gagatgaagagcttgctttgttccttgagatgaggaggagagagaaagagaatgaaaagaatgacattctacttcttcaaaactctgaggaacttgattt |
117 |
Q |
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| T |
24928913 |
gagatgaagagcttgctttgttccttgagatgaggaggagagagaaagagaatgaaaagaatgaccttctacttcttcaaaactctgaggaacttgattt |
24928814 |
T |
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| Q |
118 |
gtccaacttgggtatgtttttt |
139 |
Q |
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|||||||||||||||||||||| |
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| T |
24928813 |
gtccaacttgggtatgtttttt |
24928792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 24927476 - 24927391
Alignment:
| Q |
140 |
acaagagttttttgttatcaggcttcttacaccacctgatacaccgctttttcctactttagacaaggagtcacaaatgccattga |
225 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24927476 |
acaagagtttttcgttatcaggcttcttacaccacctgatacaccactttttcctactttagacaaggagtcacaaatgccattga |
24927391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 31869828 - 31869878
Alignment:
| Q |
27 |
agcttgctttgttccttgagatgaggaggagagagaaagagaatgaaaaga |
77 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869828 |
agcttgctttgttccttgagatgaggaggagagagaaagagaatgaaaaga |
31869878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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