View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_low_2 (Length: 314)
Name: NF0428_low_2
Description: NF0428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_low_2 |
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| [»] scaffold0640 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 41199871 - 41200005
Alignment:
| Q |
93 |
agaaatgaactttgttttaggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttt |
192 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41199871 |
agaaatgaactt-gttttaggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatatgttt |
41199969 |
T |
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| Q |
193 |
tgcgtaataaatgcatatcacaccattcattctttc |
228 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
41199970 |
tgcgtaataaatgcatatcacacgattcattctttc |
41200005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 1041559 - 1041693
Alignment:
| Q |
93 |
agaaatgaactttgttttaggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttt |
192 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1041559 |
agaaatgaactt-gttttagcagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatcagttt |
1041657 |
T |
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| Q |
193 |
tgcgtaataaatgcatatcacaccattcattctttc |
228 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
1041658 |
tgcgtaataaatgcatatcacacgattcattctttc |
1041693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 41192634 - 41192758
Alignment:
| Q |
104 |
ttgttttaggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttttgcgtaataaa |
203 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41192634 |
ttgttttagcagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatcagttttgcgtaataaa |
41192733 |
T |
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| Q |
204 |
tgcatatcacaccattcattctttc |
228 |
Q |
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| T |
41192734 |
tgcatatcacacgattcattctttc |
41192758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 41407385 - 41407443
Alignment:
| Q |
170 |
tcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttc |
228 |
Q |
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| T |
41407385 |
tcagttagatttctcattagttttgcgtaattaaagcataacacactattcattctttc |
41407443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 33323150 - 33323284
Alignment:
| Q |
93 |
agaaatgaactttgttttaggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttt |
192 |
Q |
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| T |
33323150 |
agaaatgaactt-gttttagcagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatcagttt |
33323248 |
T |
|
| Q |
193 |
tgcgtaataaatgcatatcacaccattcattctttc |
228 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
33323249 |
tgcgtaataaatgcatatcacacgattcattctttc |
33323284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 16700496 - 16700400
Alignment:
| Q |
112 |
ggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttttgcgtaataaatgcata |
209 |
Q |
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|||||||| ||||||||| ||||| ||||| ||||| | ||| || |||||| |||| ||||||||| |||||||| ||||||| ||||||||||||| |
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| T |
16700496 |
ggagtctt-acaatgtgtcagttgaaacagcaggatgcgactgatatgttttcgaatatcagttagacttctcatcagttttgcataataaatgcata |
16700400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 3549 - 3491
Alignment:
| Q |
170 |
tcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttc |
228 |
Q |
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|||||||||||||||||| |||||||||||| || ||||| ||||| |||||||||||| |
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| T |
3549 |
tcagttagatttctcatcagttttgcgtaattaaagcataacacactattcattctttc |
3491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 24113 - 24055
Alignment:
| Q |
170 |
tcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttc |
228 |
Q |
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|||||||||||||||||| |||||||||||| || ||||| ||||| |||||||||||| |
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| T |
24113 |
tcagttagatttctcatcagttttgcgtaattaaagcataacacactattcattctttc |
24055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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