View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0428_low_4 (Length: 302)
Name: NF0428_low_4
Description: NF0428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0428_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 26295326 - 26295255
Alignment:
| Q |
170 |
atatagacttgaaagtgaatttgagttttccctctctaagatcaagttgagaacatacttgtgcatattctt |
241 |
Q |
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| T |
26295326 |
atatagacttgaaagtgaatttgagttttccctctctaagatcaagttgagaacatacttgtgcattttctt |
26295255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 26295496 - 26295449
Alignment:
| Q |
80 |
aaaagtcactattaatttctatatatttaaacacttctaatttgaatgc |
128 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26295496 |
aaaagtcactat-aatttctatatatttaaacacttctaatttgaatgc |
26295449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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