View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0429_high_1 (Length: 497)
Name: NF0429_high_1
Description: NF0429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0429_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 40942470 - 40941990
Alignment:
| Q |
1 |
gtgtcaaggttgcaagactattttaaagggaggtgatgggtgatgaatttcctaaacgataaaagtatagctacaatgtgaaaaaggtagaagtatgaat |
100 |
Q |
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| T |
40942470 |
gtgtcaagattgcaagactattttaaagggaggtgatgggtgatgaatttcctaaacgataaaagtatagctacaatgtgaaaaaggtagaagtatgaat |
40942371 |
T |
|
| Q |
101 |
aaaaatgttatattgaatatgaacatgacagatgcccataagttttggaatgttcatgcaacatagaccaaaatagcacatcaagattttattgattgaa |
200 |
Q |
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| T |
40942370 |
aaaaatgttatattgaatatgaacatgacagatgcccataagttttggaatgttcatgcaacatagaccaaaatagcacatcaagattttattgattgaa |
40942271 |
T |
|
| Q |
201 |
acaagttttaaaattggaatgaaaaagaacatgtccttccacaagcaatgatctaaattaccttcagcacagctgcaacagtgcctgggggcttggaacc |
300 |
Q |
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| T |
40942270 |
acaagttttaaaattggaaggaaaaagaacatgtccttccacaagcaatgatctaaattaccttcagcacagctgcaacagtgcctgggggcttggaacc |
40942171 |
T |
|
| Q |
301 |
gtcaggaactttgaagactgcgttatgcctatgtggatcaaagggctcatttgtagggtcaaatttttctacaccaaactttttaagtgcctgtaaatat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40942170 |
gtcaggaactttgaagactgcgttatgcctatgtggatcaaagggctcatttgtagggtcaaatttttctacaccaaactttttaagtgcctgtaaatat |
40942071 |
T |
|
| Q |
401 |
aagcagtaccttcaaaacaatagcctgaagcaatatattgtccccagagtttcatttttaagcacatgatgtgatgatgat |
481 |
Q |
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| T |
40942070 |
aagcattaccttcaaaacaatagcctgaagcaatatattgtccccagagtttcatttttaagcacatgatgtgatgatgat |
40941990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 396
Target Start/End: Complemental strand, 21507227 - 21507090
Alignment:
| Q |
259 |
taccttcagcacagctgcaacagtgcctgggggcttggaaccgtcaggaactttgaagactgcgttatgcctatgtggatcaaagggctcatttgtaggg |
358 |
Q |
| |
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|||||| || ||| || ||||||||||||| ||||||||| | || || | || ||||| || |||||||| | ||||||||| || ||||||||||| |
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| T |
21507227 |
taccttgagaacaactccaacagtgcctggaggcttggaagcatcgggtatttggaagatggcattatgcctgtttggatcaaatggttcatttgtagga |
21507128 |
T |
|
| Q |
359 |
tcaaatttttctacaccaaactttttaagtgcctgtaa |
396 |
Q |
| |
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||| ||||||| ||||| |||||||||| ||||||| |
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| T |
21507127 |
tcatatttttcaacaccgtgctttttaagtacctgtaa |
21507090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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