View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0429_low_13 (Length: 294)
Name: NF0429_low_13
Description: NF0429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0429_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 40942470 - 40942190
Alignment:
| Q |
1 |
gtgtcaaggttgcaagactattttaaagggaggtgatgggtgatgaatttcctaaacgataaaagtatagctacaatgtgaaaaaggtagaagtatgaat |
100 |
Q |
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| T |
40942470 |
gtgtcaagattgcaagactattttaaagggaggtgatgggtgatgaatttcctaaacgataaaagtatagctacaatgtgaaaaaggtagaagtatgaat |
40942371 |
T |
|
| Q |
101 |
aaaaatgttatattgaatatgaacatgacagatgcccataagttttggaatgttcatgcaacatagaccaaaatagcacatcaagattttattgattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40942370 |
aaaaatgttatattgaatatgaacatgacagatgcccataagttttggaatgttcatgcaacatagaccaaaatagcacatcaagattttattgattgaa |
40942271 |
T |
|
| Q |
201 |
acaagttttaaaattggaatgaaaaagaacatgtccttccacaagcaatgatctaaattaccttcagcacagctgcaacag |
281 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40942270 |
acaagttttaaaattggaaggaaaaagaacatgtccttccacaagcaatgatctaaattaccttcagcacagctgcaacag |
40942190 |
T |
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