View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0429_low_2 (Length: 560)
Name: NF0429_low_2
Description: NF0429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0429_low_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 83 - 531
Target Start/End: Complemental strand, 10210545 - 10210092
Alignment:
| Q |
83 |
cagagagatattaaaggaatggtggctaagggaatatgcatcaccaggtccaggagtttcatacagccagatgtatcaaaattgctctgtggtgtatcct |
182 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
10210545 |
cagagagatattaaaggaatggtggctaagggaatatgcatcaccaggtccaggagtttcatacaactagatgtatcaaaattgctctgtggtgtatcct |
10210446 |
T |
|
| Q |
183 |
c---ttagatgtaagacagatttaatctcggcattttgttaagcaagggtatattaaacatgagaaaggcatcgacaaatgttaannnnnnnn-aacaga |
278 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| || |
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| T |
10210445 |
cctcttagatgtaagacagatttaatctcggcattttgttaagcaagggtatattaaacattagaaaggcatcgacaaatgttaatttttttttaacgga |
10210346 |
T |
|
| Q |
279 |
atgaaatgaaatgtcaatggtgttaaccttttggaacataaaggactaacttaaggggaaaaaagataggattaatctgaagtcttattgcacactaaac |
378 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10210345 |
atgaaatgaaatgtcaatggtgttaaccttttggaacataaaggacgaacttaaggggaaaaaagataggattaatctgaagtcttattgcacactaaac |
10210246 |
T |
|
| Q |
379 |
attgtagccccttactgtaatttcatgt-ttgttaatactgtaagtattttattaaggatatatagggatcaaatgatcctactctaatctctcaacnnn |
477 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10210245 |
attgtagccccttactgtaatttcatgtcttgttaatactgtaagtattttattaaggatatatagggatcaaatgatcccactctaatctctcaacttt |
10210146 |
T |
|
| Q |
478 |
nnnnatcacctgcattcttaaccaccaaggggagaaagaagcctctgtatctta |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10210145 |
ttttatcacctgcattcttaaccaccaaggggagaaagaagcctctgtatctta |
10210092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 88 - 251
Target Start/End: Complemental strand, 10216333 - 10216171
Alignment:
| Q |
88 |
agatattaaaggaatggtggctaagggaatatgcatcaccaggtccaggagtttcatacagccagatgtatcaaaattgctctgtggtgtatcctcttag |
187 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10216333 |
agatattaaaggaatggtggctaagggaatatgcatcacaaggtccaggagtttcatacagccagatgtatc-aaattgctctgtggtgtatcctcttag |
10216235 |
T |
|
| Q |
188 |
atgtaagacagatttaatctcggcattttgttaagcaagggtatattaaacatgagaaaggcat |
251 |
Q |
| |
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|||||||||| ||| ||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10216234 |
atgtaagacaaattaaattaatgcattttgttaagcaggggtatattaaacatgagaaaggcat |
10216171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 167 - 531
Target Start/End: Original strand, 10108667 - 10109025
Alignment:
| Q |
167 |
ctctgtggtgtatcctcttagatgtaagacagatttaatctcggcattttgttaagcaagggtatattaaacatgagaaaggcatcgacaaatgttaann |
266 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| ||| ||||||||||||||||||||||| ||| ||||||| |
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| T |
10108667 |
ctctgtggtgtatcctcttagatgtaagacagattaaatctctgcattttcttaagcaggggcatattaaacatgagaaaggcatcaacacatgttaatt |
10108766 |
T |
|
| Q |
267 |
nnnnnnaacagaatgaaatgaaatgtcaatggtgttaaccttttggaacataaaggactaacttaaggggaaaaaagatag--gattaatctgaagtct- |
363 |
Q |
| |
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| || || ||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| || |||||||| ||||||| |
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| T |
10108767 |
ttcttaagcaaaa-------aaaggtcaatgttgttaaccttttgaaacataaaggaccaacttaaggggaaaaaagacagaggattaatccgaagtctc |
10108859 |
T |
|
| Q |
364 |
-tattgcacactaaacattgtagccccttactgtaatttcatgt-ttgttaatactgtaagtattttattaaggatatatagggatcaaatgatcctact |
461 |
Q |
| |
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|| |||| ||| | | |||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| |
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| T |
10108860 |
ttactgcaaactgacaactgtagctccttactgtaaattcatgccttgttaatactgtaagtattttattaaggatatatagggataaaattctcccact |
10108959 |
T |
|
| Q |
462 |
ctaatctctcaacnnnnnnnatcacctgcattcttaaccaccaaggggagaaagaagcctctgtatctta |
531 |
Q |
| |
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|| | ||||||| |||||||| ||| ||||||||| ||||||||||||||||||||||||| |
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| T |
10108960 |
ct--tatctcaac-ttttttatcacctgtgttc-caaccaccaaagggagaaagaagcctctgtatctta |
10109025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 92 - 244
Target Start/End: Complemental strand, 9683149 - 9683004
Alignment:
| Q |
92 |
attaaaggaatggtggctaagggaatatgcatcaccaggtccaggagtttcatacagccagatgtatcaaaattgctctgtggtgtatcctcttagatgt |
191 |
Q |
| |
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|||||||||||||| |||| ||||||||||||||| ||| |||| |||| |||||||||||||||| |||||||||||| ||||||| ||||||| |
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| T |
9683149 |
attaaaggaatggttgctaggggaatatgcatcacaagg------agttccataaagccagatgtatcaaa-ttgctctgtggtttatcctcctagatgt |
9683057 |
T |
|
| Q |
192 |
aagacagatttaatctcggcattttgttaagcaagggtatattaaacatgaga |
244 |
Q |
| |
|
|||| || ||||||||| |||||||||||| |||||| ||||||||||||||| |
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|
| T |
9683056 |
aagaaagttttaatctctgcattttgttaatcaagggcatattaaacatgaga |
9683004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 9675208 - 9675108
Alignment:
| Q |
150 |
cagatgtatcaaaattgctctgtggtgtatcctcttagatgtaagacagatttaatctcggcattttgttaag---caagggtatattaaacatgagaaa |
246 |
Q |
| |
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||||||||||||| ||||| |||||||||||||| || |||||| |||||||||||||| ||||||||||||| || ||| ||||||||||||||||| |
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| T |
9675208 |
cagatgtatcaaa-ttgctatgtggtgtatcctcctaaatgtaaaacagatttaatctctgcattttgttaagcatcaggggcatattaaacatgagaaa |
9675110 |
T |
|
| Q |
247 |
gg |
248 |
Q |
| |
|
|| |
|
|
| T |
9675109 |
gg |
9675108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 442
Target Start/End: Original strand, 13855603 - 13855735
Alignment:
| Q |
309 |
ttggaacataaaggactaacttaaggggaaaaaagataggattaatctgaagtct--tattgcacactaaacattgtagccccttactgtaatttcatg- |
405 |
Q |
| |
|
|||||| | ||||||| |||||||||| ||||||||| ||||| ||||||| || ||||||||||| | |||||| |||||||||||||||||| |
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|
| T |
13855603 |
ttggaaaacaaaggaccaacttaagggaaaaaaagat-----taatccgaagtctcttactgcacactaaaaactgtagctccttactgtaatttcatgc |
13855697 |
T |
|
| Q |
406 |
tttgttaatactg-taagtattttattaaggatatata |
442 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
13855698 |
cttgttaatactgttaagtattttgttaaggatatata |
13855735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 10108616 - 10108665
Alignment:
| Q |
83 |
cagagagatattaaa-ggaatggtggctaagggaatatgcatcaccaggt |
131 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10108616 |
cagagagatattaaaaggaatggtggctaagggaatatgcatcacaaggt |
10108665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 526
Target Start/End: Complemental strand, 10212732 - 10212688
Alignment:
| Q |
482 |
atcacctgcattcttaaccaccaaggggagaaagaagcctctgta |
526 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||||||||| |
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|
| T |
10212732 |
atcacctgcattgtcaaccaccaaggagagaaagaagcctctgta |
10212688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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