View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0429_low_5 (Length: 410)

Name: NF0429_low_5
Description: NF0429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0429_low_5
NF0429_low_5
[»] chr1 (5 HSPs)
chr1 (7-183)||(31070938-31071112)
chr1 (81-183)||(229445-229547)
chr1 (106-183)||(50525699-50525776)
chr1 (7-80)||(229075-229148)
chr1 (7-60)||(50525786-50525839)
[»] chr2 (1 HSPs)
chr2 (47-183)||(5590640-5590774)
[»] chr3 (5 HSPs)
chr3 (16-123)||(27405084-27405189)
chr3 (204-361)||(24656455-24656609)
chr3 (204-379)||(24634333-24634505)
chr3 (204-280)||(24672909-24672982)
chr3 (190-305)||(24677035-24677147)
[»] chr5 (1 HSPs)
chr5 (81-183)||(38919564-38919666)
[»] chr7 (1 HSPs)
chr7 (68-155)||(38130442-38130527)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 31071112 - 31070938
Alignment:
Q  7 gcagcagagaagaatgtatatcactgttttgcttctctagacgtttatataatagccaagtttatgttttattatataaaatattgtaaggtagtaccca 106  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||    
T  31071112 gcagcaaagaagaatgtatatcactgttttgcttctctaaacgtttatataatcgccaagtttatgttttattata--aaatattgtaaggtagtaccca 31071015  T
Q  107 ttaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtatagcaactct 183  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  31071014 ttaaaagagaataccacctttagttgaaagtgccgtgcaaattcgtatgttaacttgtcgtaccgtatagcaactct 31070938  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 229445 - 229547
Alignment:
Q  81 tataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtatagcaac 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  229445 tataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtataacaac 229544  T
Q  181 tct 183  Q
    |||    
T  229545 tct 229547  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 50525776 - 50525699
Alignment:
Q  106 attaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtatagcaactct 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50525776 attaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgttttaacttgtcgtaccgtatagcaactct 50525699  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 229075 - 229148
Alignment:
Q  7 gcagcagagaagaatgtatatcactgttttgcttctctagacgtttatataatagccaagtttatgttttatta 80  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229075 gcagcaaagaagaatgtatataactgttttgcttctctagacgtttatataatagccaagtttatgttttatta 229148  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 50525839 - 50525786
Alignment:
Q  7 gcagcagagaagaatgtatatcactgttttgcttctctagacgtttatataata 60  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50525839 gcagcaaagaagaatgtatatcactgttttgcttctctagacgtttatataata 50525786  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 5590640 - 5590774
Alignment:
Q  47 acgtttatataatagccaagtttatgttttattatataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaa 146  Q
    ||||||||||| || ||| | | |||||||||||||  |||||||||||||||| || ||||||||||||||||||| |  | ||||   ||||||||||    
T  5590640 acgtttatatattaaccaggatgatgttttattata--aaatattgtaaggtagcactcattaaaagagaataccacatgaaattgaagttgtcgtgcaa 5590737  T
Q  147 attcgtgtgttaacttgtcgtaccgtatagcaactct 183  Q
    ||||||||||| | |||||||||||||||||||||||    
T  5590738 attcgtgtgttgatttgtcgtaccgtatagcaactct 5590774  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 27405189 - 27405084
Alignment:
Q  16 aagaatgtatatcactgttttgcttctctagacgtttatataatagccaagtttatgttttattatataaaatattgtaaggtagtacccattaaaagag 115  Q
    |||||||| |||||| ||||  |||||||| ||||||||||| || ||| ||| |||||||||||||  |||||||||||||||| ||||||||||||||    
T  27405189 aagaatgtttatcaccgtttgccttctctaaacgtttatatattaaccatgttgatgttttattata--aaatattgtaaggtagcacccattaaaagag 27405092  T
Q  116 aataccac 123  Q
    ||||||||    
T  27405091 aataccac 27405084  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 204 - 361
Target Start/End: Complemental strand, 24656609 - 24656455
Alignment:
Q  204 attcttatgagcttagagttggcttcagtcggaataaagtatcaaggttctaacactaacaaccccttccaacaatcctccccaacatttttcatgtttt 303  Q
    |||||||||| ||||||||||| |||| | ||| ||||||| |||||||  |||||   |||||||||||||||||  ||||||    | ||  ||||||    
T  24656609 attcttatgaccttagagttgggttcaattggagtaaagtaccaaggtttaaacac---caaccccttccaacaattatccccacttatgttgctgtttt 24656513  T
Q  304 tgactgctttgttttgccacacagttacaaccatggctgagatgagcttcctaactac 361  Q
    ||||||||   ||||| ||  ||||| ||||||||||||| |||||||||||||||||    
T  24656512 tgactgctagattttgtcatgcagttgcaaccatggctgacatgagcttcctaactac 24656455  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 379
Target Start/End: Complemental strand, 24634505 - 24634333
Alignment:
Q  204 attcttatgagcttagagttggcttcagtcggaataaagtatcaaggttctaacactaacaaccccttccaacaatcctccccaacatttttcatgtttt 303  Q
    ||||| ||||| || ||||||| |||| | ||||| | |||||||||||| ||   ||||||||| ||||||||||| |||||||  | |||| ||||||    
T  24634505 attctgatgagtttggagttgggttcaattggaattatgtatcaaggttcaaa---taacaaccctttccaacaatcttccccaatttgtttcctgtttt 24634409  T
Q  304 tgactgctttgttttgccacacagttacaaccatggctgagatgagcttcctaactacgaaaatcgtattccactt 379  Q
    | ||| || | ||||| ||  ||||| ||||||||||||| |||||||| | |||||| |  ||| ||||||||||    
T  24634408 ttacttctgtattttgtcatgcagttgcaaccatggctgacatgagcttaccaactactatgatcatattccactt 24634333  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 24672982 - 24672909
Alignment:
Q  204 attcttatgagcttagagttggcttcagtcggaataaagtatcaaggttctaacactaacaaccccttccaacaatc 280  Q
    |||||||||| ||||||||| |||||| | ||||| |||||||||||||  |||||   ||||||||||||||||||    
T  24672982 attcttatgaccttagagttagcttcaattggaattaagtatcaaggtttaaacac---caaccccttccaacaatc 24672909  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 305
Target Start/End: Complemental strand, 24677147 - 24677035
Alignment:
Q  190 ataaagcttatttcattcttatgagcttagagttggcttcagtcggaataaagtatcaaggttctaacactaacaaccccttccaacaatcctccccaac 289  Q
    |||||||||||   ||||| || ||||| |||||||||||  | || || |||| ||||||||| |||||   |||||| ||||||||| | |||||||     
T  24677147 ataaagcttatactattctgatcagcttggagttggcttccattggtattaagtgtcaaggttcaaacac---caacccattccaacaaccttccccaat 24677051  T
Q  290 atttttcatgtttttg 305  Q
     |||||||||||||||    
T  24677050 ttttttcatgtttttg 24677035  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 38919666 - 38919564
Alignment:
Q  81 tataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtatagcaac 180  Q
    |||||||||||||||||||  || ||||||||||||||||||| |  | ||||   ||||||||||||| ||||||| |||||||||| |||||||||||    
T  38919666 tataaaatattgtaaggtaacactcattaaaagagaataccacatgaaattgaagttgtcgtgcaaatttgtgtgttgacttgtcgtatcgtatagcaac 38919567  T
Q  181 tct 183  Q
    |||    
T  38919566 tct 38919564  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 38130442 - 38130527
Alignment:
Q  68 ttatgttttattatataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtg 155  Q
    |||||||||||||||  ||||||| ||| |||| | ||||||||||||||  |||  | |||||||  || |||||||||||||||||    
T  38130442 ttatgttttattata--aaatattataatgtagcaaccattaaaagagaaatccagttgtagttgaacgtatcgtgcaaattcgtgtg 38130527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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