View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0433_high_1 (Length: 355)
Name: NF0433_high_1
Description: NF0433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0433_high_1 |
 | |
|
| [»] scaffold0236 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 30 - 348
Target Start/End: Complemental strand, 43704172 - 43703854
Alignment:
| Q |
30 |
ctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagaagcaacactagacatactctttggaaact |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43704172 |
ctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagcagcaacactagacatactctttggaaact |
43704073 |
T |
|
| Q |
130 |
ctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43704072 |
ctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacac |
43703973 |
T |
|
| Q |
230 |
tccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaac |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43703972 |
tccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaac |
43703873 |
T |
|
| Q |
330 |
ccaattcccattcttttct |
348 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
43703872 |
ccaattcccattcttttct |
43703854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 30 - 348
Target Start/End: Complemental strand, 43715143 - 43714825
Alignment:
| Q |
30 |
ctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagaagcaacactagacatactctttggaaact |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43715143 |
ctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagcagcaacactagacatactctttggaaact |
43715044 |
T |
|
| Q |
130 |
ctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43715043 |
ctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacac |
43714944 |
T |
|
| Q |
230 |
tccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaac |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43714943 |
tccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaac |
43714844 |
T |
|
| Q |
330 |
ccaattcccattcttttct |
348 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
43714843 |
ccaattcccattcttttct |
43714825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 45 - 344
Target Start/End: Complemental strand, 43687299 - 43687000
Alignment:
| Q |
45 |
aatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagaagcaacactagacatactctttggaaactctttgtaataaaact |
144 |
Q |
| |
|
||||| ||||| |||||||||||||| || ||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43687299 |
aatacaaaagaagataccaagtttccggcagccattgccaatccagaaagtgcagaagaaacactagacatagtctttggaaactctttgtaataaaact |
43687200 |
T |
|
| Q |
145 |
cattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacactccatgagtatcatt |
244 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43687199 |
cattttggccaataacattgaatgcttcagctataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacactccatgagtattatt |
43687100 |
T |
|
| Q |
245 |
caaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
344 |
Q |
| |
|
|||| ||||| | | ||||||| ||||||||||| | ||||||||||||||||| || | |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43687099 |
caaaaatcctgcctgtattgctttctttctccttatactctcaaaaattgctgcaactacaatgtgaagaaaattaaaaaacaacccaagtcccattctt |
43687000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 31 - 344
Target Start/End: Complemental strand, 43728876 - 43728563
Alignment:
| Q |
31 |
tttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagaagcaacactagacatactctttggaaactc |
130 |
Q |
| |
|
|||||||| || | ||||| ||||| ||||||||||||||| || ||||| |||||||| ||||||||| || || |||||||||| || | |||||||| |
|
|
| T |
43728876 |
tttctatagtgttgaatacaaaagaagataccaagtttcctgcagccattcccaatccacaaagggaagcagaaatactagacatagtcctcggaaactc |
43728777 |
T |
|
| Q |
131 |
tttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacact |
230 |
Q |
| |
|
||||||||| || ||||| ||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43728776 |
tttgtaatagaattcattttggccaatagcattgaatgcttcgcttataccacccaaacaaagttgaggtgcaagccacaatgcagacattttcaacacg |
43728677 |
T |
|
| Q |
231 |
ccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacc |
330 |
Q |
| |
|
|||||||||||||||||| ||||| | | ||||||| |||||||||| | |||||||| |||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
43728676 |
ccatgagtatcattcaaaaatcctgcctgaattgctttttttctccttatactctcaaaagcagctgcagttaccaagtggagaaaatttaaaaacaacc |
43728577 |
T |
|
| Q |
331 |
caattcccattctt |
344 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
43728576 |
caattcccattctt |
43728563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 31 - 234
Target Start/End: Complemental strand, 25274248 - 25274045
Alignment:
| Q |
31 |
tttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagaagcaacactagacatactctttggaaactc |
130 |
Q |
| |
|
|||||| |||||| || | |||||| ||||||||| ||||| || ||||| ||||||||||||| |||| || |||||||||||| | |||||||||| |
|
|
| T |
25274248 |
tttctacaatgctgaacaataaagaagataccaagcttcctgcagccattcccaatccagaaagcgaagcggcgacactagacatagtacttggaaactc |
25274149 |
T |
|
| Q |
131 |
tttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacact |
230 |
Q |
| |
|
| |||||||||||||||| ||||| || | ||||| ||| | ||||||||| | ||||||||||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
25274148 |
tgtgtaataaaactcattttggcctatgaaattgactgcttcagatataccagctagacaaagttgaggtgcaagccacaatgccgacatttccaacact |
25274049 |
T |
|
| Q |
231 |
ccat |
234 |
Q |
| |
|
|||| |
|
|
| T |
25274048 |
ccat |
25274045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 25274032 - 25273955
Alignment:
| Q |
271 |
ttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattcttttct |
348 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||| | ||| |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
25274032 |
ttctccttatagtctcaaaaatcgctgcatttaccgagtagagaaaagataaaaacaaaccaattcccattcttttct |
25273955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 234
Target Start/End: Original strand, 23480 - 23683
Alignment:
| Q |
31 |
tttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaagaagcaacactagacatactctttggaaactc |
130 |
Q |
| |
|
|||||| |||||| || | |||||| ||||||||| ||||| || ||||| ||||||||||||| |||| ||| |||||||||||| | |||||||||| |
|
|
| T |
23480 |
tttctacaatgctgaacaataaagaagataccaagcttcctgcagccattcccaatccagaaagcgaagcagcgacactagacatagtacttggaaactc |
23579 |
T |
|
| Q |
131 |
tttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccacattgcagacattttcaacact |
230 |
Q |
| |
|
| |||||||||||||||| ||||| || | |||| ||| | ||||||||||| ||| ||||||||||||||||||| ||| || |||| ||| ||| |
|
|
| T |
23580 |
tgtgtaataaaactcattttggcctatgaatttgactgcttcagatataccagccagacagagttgaggtgcaagccacaatgccgaaatttccaaaact |
23679 |
T |
|
| Q |
231 |
ccat |
234 |
Q |
| |
|
|||| |
|
|
| T |
23680 |
ccat |
23683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 23696 - 23773
Alignment:
| Q |
271 |
ttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattcttttct |
348 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| ||||| |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
23696 |
ttctccttatagtctcaaaaattgctgcatttactaagtggagaaaagataaaaacaaaccaattcccattcttttct |
23773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 111 - 344
Target Start/End: Complemental strand, 2690833 - 2690600
Alignment:
| Q |
111 |
gacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccaca |
210 |
Q |
| |
|
|||||| |||| ||||| || |||| || |||||||| ||||| ||||||||||| ||| ||||| ||| |||| ||||||||||| |||||||| |
|
|
| T |
2690833 |
gacatagtcttgggaaattcggtgtagtagaactcattttggcctataacattgaatgcttcagctattccacccaagcaaagttgaggaaaaagccaca |
2690734 |
T |
|
| Q |
211 |
ttgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaagtg |
310 |
Q |
| |
|
|||||||||| ||||||||| ||||| |||||| ||||||||| ||||||||| ||| ||||| |||||| | ||||| ||| |||| |||||| |
|
|
| T |
2690733 |
ttgcagacatgttcaacactgaatgaggatcattaccatatccttcattgattgctcttcttcgccttatagtctcgacaattgatgcggttaccaagtg |
2690634 |
T |
|
| Q |
311 |
aagaaaattaaaaaacaacccaattcccattctt |
344 |
Q |
| |
|
|||||| |||||||| || | |||||||||| |
|
|
| T |
2690633 |
gagaaaagagaaaaacaatccgagtcccattctt |
2690600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University