View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0433_low_1 (Length: 425)
Name: NF0433_low_1
Description: NF0433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0433_low_1 |
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| [»] scaffold0324 (1 HSPs) |
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| [»] scaffold0183 (1 HSPs) |
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| [»] scaffold0789 (1 HSPs) |
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| [»] scaffold1354 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 45565676 - 45565524
Alignment:
| Q |
5 |
tttctttgaagtgtgcttggaggtattcttcctactcttatgagacttcaagagagaggagttctatgttcaaacggatgtccccattgtgaaacaaact |
104 |
Q |
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| T |
45565676 |
tttctttgaagtgtgcttggaggtattcttcctactcttatgagacttcaaaagagaggagttccatgttcaaatggatgtccccattgtgaaacaaact |
45565577 |
T |
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| Q |
105 |
atgagaacgattggatgcaaagcggcaaaacaaatatggtgcgaggctgatct |
157 |
Q |
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| T |
45565576 |
atgagaacgattggatgtaaagcggcaaaacaaatatggtgcgaggctgatct |
45565524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 202 - 358
Target Start/End: Complemental strand, 13001425 - 13001269
Alignment:
| Q |
202 |
caggatttttctagtgcttggtagatggtgttagggataaggatttatgtaagtttgcatagactctatttaagggaatatcatctatgtgtgaaaaggt |
301 |
Q |
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| T |
13001425 |
caggctttttctgatgcttggtagatggtgatgcagacaaggatttatgtaagtttgcatagactttattcgagggaatattgtctatgtctaaagagat |
13001326 |
T |
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| Q |
302 |
ggaaacagaggttgagtgtgaggctgaggttgaactaaattctatttctattacatt |
358 |
Q |
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| T |
13001325 |
tgacacagaggttgagtgagagtctgaggttgaactagattctatttctattacatt |
13001269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0324 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0324
Description:
Target: scaffold0324; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 201 - 421
Target Start/End: Original strand, 8181 - 8401
Alignment:
| Q |
201 |
tcaggatttttctagtgcttggtagatggtgttagggataaggatttatgtaagtttgcatagactctatttaagggaatatcatctatgtgtgaaaagg |
300 |
Q |
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| T |
8181 |
tcaggctttttttggtgtttggtagatgatgatggggctaaagacttttgtagattttcacagactctattcaagggaatatcatctatgtctaagaagg |
8280 |
T |
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| Q |
301 |
tggaaacagaggttgagtgtgaggctgaggttgaactaaattctatttctattacatttgagatattatgagaatcaaagttacttcttgtagcttctga |
400 |
Q |
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| T |
8281 |
ttgagacagagtttgtgtttgaggttgaggttgaactagattctatttctattacattagagatattatgagaatcagggttacctcttgttgcttctga |
8380 |
T |
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| Q |
401 |
agcaccagcttctgaacaagt |
421 |
Q |
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|||| |||||||||||||||| |
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| T |
8381 |
agcagcagcttctgaacaagt |
8401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0183 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0183
Description:
Target: scaffold0183; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 284 - 421
Target Start/End: Original strand, 1443 - 1580
Alignment:
| Q |
284 |
atctatgtgtgaaaaggtggaaacagaggttgagtgtgaggctgaggttgaactaaattctatttctattacatttgagatattatgagaatcaaagtta |
383 |
Q |
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|||||||| |||| | || || || ||||||||||| |||| ||||||||||||| |||| |||||||||||||| ||||| ||||| ||||| ||| |
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| T |
1443 |
atctatgtctgaagaagttgacactgaggttgagtgagaggttgaggttgaactagattcaatttctattacattagagatgttatgtgaatcggtatta |
1542 |
T |
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| Q |
384 |
cttcttgtagcttctgaagcaccagcttctgaacaagt |
421 |
Q |
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| |||||| |||||||||||| || ||||||||||||| |
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| T |
1543 |
cctcttgttgcttctgaagcatcaacttctgaacaagt |
1580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0789 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0789
Description:
Target: scaffold0789; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 309 - 420
Target Start/End: Original strand, 5765 - 5876
Alignment:
| Q |
309 |
gaggttgagtgtgaggctgaggttgaactaaattctatttctattacatttgagatattatgagaatcaaagttacttcttgtagcttctgaagcaccag |
408 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||| | | ||| |||||||| ||| |||| | |||||||||||| ||| |
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| T |
5765 |
gaggttgagtgtgaggctgaggttgaactagattctatttctattatattagcagtgttaagagaatcagtattatctcttcttgcttctgaagcatcag |
5864 |
T |
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| Q |
409 |
cttctgaacaag |
420 |
Q |
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|||||||||||| |
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| T |
5865 |
cttctgaacaag |
5876 |
T |
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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 358
Target Start/End: Original strand, 18785224 - 18785381
Alignment:
| Q |
201 |
tcaggatttttctagtgcttggtagatggtgttagggataaggatttatgtaagtttgcatagactctatttaagggaatatcatctatgtgtgaaaagg |
300 |
Q |
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||||||| ||||| ||| ||||||||||| | | || |||| ||| |||| ||| ||||||||||||| || |||||||||||||||| |||| | | |
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| T |
18785224 |
tcaggatctttctggtgtttggtagatggagatgtggctaagcttttgtgtagattttcatagactctattcaaaggaatatcatctatgtctgaagatg |
18785323 |
T |
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| Q |
301 |
tggaaacagaggttgagtgtgaggctgaggttgaactaaattctatttctattacatt |
358 |
Q |
| |
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| || |||||| || || |||| ||||||||||||| ||||||||||||||||||| |
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| T |
18785324 |
ttgagacagagtttatgttagaggttgaggttgaactagattctatttctattacatt |
18785381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 45286940 - 45286972
Alignment:
| Q |
86 |
ccccattgtgaaacaaactatgagaacgattgg |
118 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
45286940 |
ccccattgtgaaacaaactacgagaacgattgg |
45286972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1354 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1354
Description:
Target: scaffold1354; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 1814 - 1870
Alignment:
| Q |
360 |
gagatattatgagaatcaaagttacttcttgtagcttctgaagcaccagcttctgaa |
416 |
Q |
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| T |
1814 |
gagatattgtgagaatcagtgttacctcttgtagcttctgaagcatcagcttctgaa |
1870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 12395684 - 12395607
Alignment:
| Q |
342 |
tctatttctattacattt---gagatattatgagaatcaaagttacttcttgtagcttctgaagcaccagcttctgaa |
416 |
Q |
| |
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||||||||||||||||| |||||||| ||||||| || |||| ||||||||||||||||||| ||||||||||| |
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| T |
12395684 |
tctatttctattacattatcagagatattgtgagaataaatgttatctcttgtagcttctgaagcatcagcttctgaa |
12395607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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