View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0433_low_4 (Length: 309)

Name: NF0433_low_4
Description: NF0433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0433_low_4
NF0433_low_4
[»] chr2 (9 HSPs)
chr2 (97-221)||(37497087-37497211)
chr2 (122-201)||(37491848-37491927)
chr2 (130-176)||(45000847-45000893)
chr2 (130-182)||(18570978-18571030)
chr2 (130-182)||(31026701-31026753)
chr2 (146-183)||(10250731-10250768)
chr2 (100-180)||(5367200-5367279)
chr2 (100-180)||(18840985-18841064)
chr2 (146-182)||(40681988-40682024)
[»] chr3 (8 HSPs)
chr3 (124-202)||(20691305-20691383)
chr3 (125-182)||(40150567-40150624)
chr3 (100-185)||(45451556-45451640)
chr3 (108-181)||(48202248-48202321)
chr3 (129-185)||(13807172-13807228)
chr3 (107-185)||(25093505-25093582)
chr3 (146-208)||(32384380-32384442)
chr3 (100-158)||(40993307-40993364)
[»] chr7 (10 HSPs)
chr7 (107-182)||(2982114-2982189)
chr7 (146-207)||(31808526-31808586)
chr7 (133-182)||(38134410-38134459)
chr7 (100-207)||(598189-598295)
chr7 (129-187)||(21247736-21247794)
chr7 (100-185)||(12278838-12278922)
chr7 (146-183)||(44172907-44172944)
chr7 (130-182)||(2525845-2525897)
chr7 (130-178)||(9482944-9482992)
chr7 (100-180)||(21880160-21880239)
[»] chr1 (7 HSPs)
chr1 (101-196)||(19637760-19637854)
chr1 (100-207)||(38078633-38078739)
chr1 (124-214)||(2896116-2896206)
chr1 (146-182)||(11571591-11571627)
chr1 (130-214)||(20157351-20157435)
chr1 (122-185)||(25452143-25452204)
chr1 (146-182)||(40747790-40747826)
[»] chr5 (10 HSPs)
chr5 (98-180)||(30502358-30502439)
chr5 (98-180)||(30542701-30542782)
chr5 (130-181)||(17925173-17925224)
chr5 (118-181)||(39424648-39424711)
chr5 (131-182)||(43208276-43208327)
chr5 (130-180)||(3966511-3966561)
chr5 (141-215)||(41600871-41600945)
chr5 (146-195)||(11596472-11596521)
chr5 (99-180)||(23012379-23012459)
chr5 (130-182)||(28296334-28296386)
[»] chr4 (12 HSPs)
chr4 (123-213)||(33950111-33950201)
chr4 (147-207)||(12077809-12077869)
chr4 (125-201)||(56049864-56049939)
chr4 (146-185)||(5654608-5654647)
chr4 (131-182)||(18513243-18513294)
chr4 (131-182)||(43299973-43300024)
chr4 (106-185)||(48139267-48139345)
chr4 (147-213)||(34515892-34515958)
chr4 (146-183)||(10546153-10546190)
chr4 (130-178)||(5225614-5225662)
chr4 (100-180)||(8423690-8423769)
chr4 (134-182)||(14465299-14465347)
[»] chr8 (11 HSPs)
chr8 (124-181)||(12985399-12985456)
chr8 (100-161)||(44462167-44462227)
chr8 (100-161)||(44469700-44469760)
chr8 (125-185)||(12606825-12606885)
chr8 (146-184)||(7616866-7616904)
chr8 (132-185)||(31236580-31236633)
chr8 (132-184)||(3508056-3508108)
chr8 (124-180)||(14134707-14134763)
chr8 (133-185)||(28819194-28819246)
chr8 (100-220)||(33405356-33405475)
chr8 (141-181)||(34201058-34201098)
[»] chr6 (13 HSPs)
chr6 (100-180)||(28715303-28715382)
chr6 (130-180)||(9617442-9617492)
chr6 (100-158)||(12236688-12236746)
chr6 (124-185)||(30851605-30851664)
chr6 (130-179)||(9629392-9629441)
chr6 (147-183)||(2140499-2140535)
chr6 (124-180)||(7265588-7265644)
chr6 (124-176)||(7377991-7378043)
chr6 (130-178)||(9024177-9024225)
chr6 (121-177)||(10157995-10158051)
chr6 (100-180)||(12627549-12627628)
chr6 (124-220)||(13851704-13851800)
chr6 (112-180)||(19040360-19040427)
[»] scaffold0571 (1 HSPs)
scaffold0571 (150-193)||(7685-7728)
[»] scaffold0598 (1 HSPs)
scaffold0598 (147-207)||(8071-8131)
[»] scaffold0011 (1 HSPs)
scaffold0011 (129-181)||(240021-240073)
[»] scaffold0007 (1 HSPs)
scaffold0007 (146-214)||(225285-225353)


Alignment Details
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 37497211 - 37497087
Alignment:
Q  97 ccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtc 196  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  37497211 ccatgtcccggtgccgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtgtcgatgtgtc 37497112  T
Q  197 agtgttcgtgttgtgtccaatgtct 221  Q
    |||||| || |||||||||||||||    
T  37497111 agtgtttgttttgtgtccaatgtct 37497087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 37491848 - 37491927
Alignment:
Q  122 cggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgt 201  Q
    |||||||||||||||||| || | |||||||||||||  |  ||||||||||| | ||||||||| ||||||||||||||    
T  37491848 cggtgtctgacaccgacacatttaattacattgaattaagttattttctcaaaattttatcagtatcgatgtgtcagtgt 37491927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 45000847 - 45000893
Alignment:
Q  130 gacaccgacagatattattacattgaattgtggcattttctcaaatt 176  Q
    |||||||||| |||| |||||||||||||||| ||||||||||||||    
T  45000847 gacaccgacacatatgattacattgaattgtgtcattttctcaaatt 45000893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 18571030 - 18570978
Alignment:
Q  130 gacaccgacagatattattacattgaattgtggcattttctcaaattattatc 182  Q
    ||||| |||| |||| ||||||||||||| || ||||||||||||||||||||    
T  18571030 gacactgacacatatgattacattgaattatgtcattttctcaaattattatc 18570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 31026753 - 31026701
Alignment:
Q  130 gacaccgacagatattattacattgaattgtggcattttctcaaattattatc 182  Q
    |||||||||| |||| ||||||||||||| || |||||||| |||||||||||    
T  31026753 gacaccgacatatatgattacattgaattatgtcattttcttaaattattatc 31026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 10250768 - 10250731
Alignment:
Q  146 attacattgaattgtggcattttctcaaattattatca 183  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  10250768 attacattgaattgtgttattttctcaaattattatca 10250731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 5367279 - 5367200
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 180  Q
    |||||||| |||| | |||||||| |||| |||||||||| |||| |||||| |||||| ||  |||| ||||||||||||    
T  5367279 tgtcccggagtcggatatgtgtcg-tgtccgacaccgacacatataattacactgaattatgtgatttcctcaaattatta 5367200  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 18840985 - 18841064
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 180  Q
    ||||||||||||| ||||||||| ||||||||||||||||  | | |||||| | |||| ||  ||||| |||||||||||    
T  18840985 tgtcccggtgtcggacatgtgtc-gtgtctgacaccgacacttgtaattacacttaattatgtaattttttcaaattatta 18841064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 40682024 - 40681988
Alignment:
Q  146 attacattgaattgtggcattttctcaaattattatc 182  Q
    ||||||||||||| || ||||||||||||||||||||    
T  40682024 attacattgaattatgtcattttctcaaattattatc 40681988  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 20691383 - 20691305
Alignment:
Q  124 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgtt 202  Q
    |||||||||||||||| |||| |||||| |||||| || |||||||||||||||||||||||  | | |||||||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattattatcagtttctacgtgtcagtgtt 20691305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 40150567 - 40150624
Alignment:
Q  125 tgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatc 182  Q
    |||| |||||||||| |||| ||||||||||||| |  ||||||||||||||||||||    
T  40150567 tgtcagacaccgacacatatgattacattgaattatatcattttctcaaattattatc 40150624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 45451640 - 45451556
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 185  Q
    |||| |||||||| |||||||||| |||| |||||||||| ||||||||| | |||| | ||  ||||||||||||||||| ||||    
T  45451640 tgtctcggtgtcggacatgtgtcg-tgtccgacaccgacacatattattatactgaagtatgtgattttctcaaattattagcagt 45451556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 48202248 - 48202321
Alignment:
Q  108 tgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattat 181  Q
    |||||||||||||| ||||| |||||| |||| |||| |||||||| |||| ||  ||||||||||| ||||||    
T  48202248 tgtcgaacatgtgttggtgtttgacacagacacatataattacattaaattatgtgattttctcaaactattat 48202321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 13807228 - 13807172
Alignment:
Q  129 tgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 185  Q
    ||||||||||| ||||||||| |||||||| ||  ||||||||||||| ||||||||    
T  13807228 tgacaccgacacatattattatattgaattatgtgattttctcaaattgttatcagt 13807172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 25093582 - 25093505
Alignment:
Q  107 gtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 185  Q
    |||||| |||||||| | |||| |||||||||| |||| |||||| |||||||||  |||||||||||| |||| ||||    
T  25093582 gtgtcggacatgtgttg-tgtccgacaccgacacatataattacactgaattgtgtgattttctcaaatcattaacagt 25093505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 32384442 - 32384380
Alignment:
Q  146 attacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgtt 208  Q
    |||||||| ||| ||| ||||||||||| |||||||||||  ||||||||| ||||| |||||    
T  32384442 attacatttaatcgtgtcattttctcaagttattatcagtgtcgatgtgtccgtgtttgtgtt 32384380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 40993307 - 40993364
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaatt 158  Q
    ||||||||||||| ||||||||| ||||| |||||||||| |||| |||||| ||||||    
T  40993307 tgtcccggtgtcggacatgtgtc-gtgtccgacaccgacacatataattacactgaatt 40993364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 2982189 - 2982114
Alignment:
Q  107 gtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatc 182  Q
    ||||| |||| ||||||||||| |||||| |||||| | |||| |||||||| || |||||||||| |||||||||    
T  2982189 gtgtctaacaagtgtcggtgtcagacaccaacagatgtgattagattgaattatgacattttctcagattattatc 2982114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 31808526 - 31808586
Alignment:
Q  146 attacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgt 207  Q
    |||||||||| ||||| |||||||||||||||||||| ||  ||| ||||||||||||||||    
T  31808526 attacattgacttgtgtcattttctcaaattattatcggt-gcgacgtgtcagtgttcgtgt 31808586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 38134410 - 38134459
Alignment:
Q  133 accgacagatattattacattgaattgtggcattttctcaaattattatc 182  Q
    ||||||| |||| ||||||||||||| || ||||||||||||||||||||    
T  38134410 accgacacatatgattacattgaattatgtcattttctcaaattattatc 38134459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 598295 - 598189
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagt 199  Q
    ||||||||||||| ||| |||||| |||||||||||||||  ||  |||||||| ||||  |  ||||||| ||||||||| | ||  ||||||||||||    
T  598295 tgtcccggtgtcggacacgtgtcg-tgtctgacaccgacacttacaattacatttaattacgtgattttcttaaattattagcggtgtcgatgtgtcagt 598197  T
Q  200 gttcgtgt 207  Q
    || |||||    
T  598196 gtccgtgt 598189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 21247736 - 21247794
Alignment:
Q  129 tgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtac 187  Q
    ||||||| ||| | || |||||||||||||  | |||||||||||||||||||||||||    
T  21247736 tgacaccaacacacatgattacattgaattacgtcattttctcaaattattatcagtac 21247794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 12278922 - 12278838
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 185  Q
    ||||||||||||  ||| | || |||||| ||||| |||| |||| |||||| |||||| || |||||||| ||||||||||||||    
T  12278922 tgtcccggtgtcagacacgcgttggtgtccgacac-gacacatataattacactgaattatgtcattttcttaaattattatcagt 12278838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 44172907 - 44172944
Alignment:
Q  146 attacattgaattgtggcattttctcaaattattatca 183  Q
    ||||||||||||| || |||||||||||||||||||||    
T  44172907 attacattgaattatgtcattttctcaaattattatca 44172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 2525845 - 2525897
Alignment:
Q  130 gacaccgacagatattattacattgaattgtggcattttctcaaattattatc 182  Q
    |||||||||| |||| |||| |||||||| || ||||| ||||||||||||||    
T  2525845 gacaccgacacatatgattatattgaattatgtcatttgctcaaattattatc 2525897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 9482992 - 9482944
Alignment:
Q  130 gacaccgacagatattattacattgaattgtggcattttctcaaattat 178  Q
    |||||||||| |||| |||||| |||||||||  |||||||||||||||    
T  9482992 gacaccgacacatataattacactgaattgtgtgattttctcaaattat 9482944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 21880239 - 21880160
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 180  Q
    ||||| ||||||| |||||||||| |||| ||||||||||  | | |||||| |||||| ||  |||||||||||||||||    
T  21880239 tgtcctggtgtcggacatgtgtcg-tgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaattatta 21880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 19637854 - 19637760
Alignment:
Q  101 gtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtc 196  Q
    |||||||||||| | |||| ||| |||| |||||||||| |||| ||||||||||||  || |||||||| ||||||||||| ||  |||||||||    
T  19637854 gtcccggtgtcggatatgtatcg-tgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatcggtgtcgatgtgtc 19637760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 38078633 - 38078739
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagt 199  Q
    ||||| ||||| |||||||||||| |||| ||||||||||  | | ||||||||||||| ||  ||||| ||||||||||| | ||  ||| ||||||||    
T  38078633 tgtcctggtgttgaacatgtgtcg-tgtccgacaccgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtcgacgtgtcagt 38078731  T
Q  200 gttcgtgt 207  Q
    ||||||||    
T  38078732 gttcgtgt 38078739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 2896116 - 2896206
Alignment:
Q  124 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtcc 214  Q
    |||||||||||||||| ||||   |||| |||||| ||  ||||||||||||||||| | ||  ||  |||||||||| ||||||||||||    
T  2896116 gtgtctgacaccgacatatatagctacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtcc 2896206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 11571627 - 11571591
Alignment:
Q  146 attacattgaattgtggcattttctcaaattattatc 182  Q
    ||||||||||||| || ||||||||||||||||||||    
T  11571627 attacattgaattatgtcattttctcaaattattatc 11571591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 20157351 - 20157435
Alignment:
Q  130 gacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtcc 214  Q
    |||||||||| |||| |||||| |||||| ||  ||||||||| ||||||| | ||  |||||||||||||  ||||| ||||||    
T  20157351 gacaccgacacatatgattacactgaattatgtgattttctcacattattagcggtgtcgatgtgtcagtgcccgtgtcgtgtcc 20157435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 25452143 - 25452204
Alignment:
Q  122 cggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 185  Q
    |||||||||||||||||| |||  |||||| |||||| ||  ||||||||||||||||| ||||    
T  25452143 cggtgtctgacaccgacacata--attacactgaattatgagattttctcaaattattagcagt 25452204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 40747790 - 40747826
Alignment:
Q  146 attacattgaattgtggcattttctcaaattattatc 182  Q
    ||||||||||||| || ||||||||||||||||||||    
T  40747790 attacattgaattatgtcattttctcaaattattatc 40747826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 30502358 - 30502439
Alignment:
Q  98 catgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 180  Q
    |||||||| |||||| |||||||||| |||| |||||||||| |||| |||||| ||||||  |  |||||||||||||||||    
T  30502358 catgtcccagtgtcggacatgtgtcg-tgtccgacaccgacacatataattacactgaattaagtgattttctcaaattatta 30502439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 30542701 - 30542782
Alignment:
Q  98 catgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 180  Q
    |||||||| |||||| |||||||||| |||| |||||||||| |||| |||||| ||||||  |  |||||||||||||||||    
T  30542701 catgtcccagtgtcggacatgtgtcg-tgtccgacaccgacacatataattacactgaattaagtgattttctcaaattatta 30542782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 17925173 - 17925224
Alignment:
Q  130 gacaccgacagatattattacattgaattgtggcattttctcaaattattat 181  Q
    |||||||||| |||||||||||||||||| ||  ||||||| ||||||||||    
T  17925173 gacaccgacacatattattacattgaattatgtgattttcttaaattattat 17925224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 39424711 - 39424648
Alignment:
Q  118 gtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattat 181  Q
    ||||||||||||||||  ||||||| | | ||||||||||  || |||||||||||||||||||    
T  39424711 gtgtcggtgtctgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattat 39424648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 43208276 - 43208327
Alignment:
Q  131 acaccgacagatattattacattgaattgtggcattttctcaaattattatc 182  Q
    |||| ||||||||| ||||||||||||| || ||||||||||||||| ||||    
T  43208276 acacagacagatatgattacattgaattatgtcattttctcaaattactatc 43208327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 3966561 - 3966511
Alignment:
Q  130 gacaccgacagatattattacattgaattgtggcattttctcaaattatta 180  Q
    |||||||||| |||| |||||| |||||||||  |||||||||||||||||    
T  3966561 gacaccgacacatataattacactgaattgtgtgattttctcaaattatta 3966511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 41600945 - 41600871
Alignment:
Q  141 atattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtcca 215  Q
    |||| |||| |||||||||||  |||||||||||||||||||| |   || |||| |||||||||||||| ||||    
T  41600945 atatgattatattgaattgtgtaattttctcaaattattatcaatgttgacgtgttagtgttcgtgttgtatcca 41600871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 11596472 - 11596521
Alignment:
Q  146 attacattgaattgtggcattttctcaaattattatcagtaccgatgtgt 195  Q
    ||||||||||||| || |||||||||||||||||||| ||| ||| ||||    
T  11596472 attacattgaattatgtcattttctcaaattattatcggtatcgacgtgt 11596521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 23012379 - 23012459
Alignment:
Q  99 atgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 180  Q
    |||||||||||||  |||||||||| ||||  ||||||||| |||| |||||||| |||| |   |||||||||||||||||    
T  23012379 atgtcccggtgtcagacatgtgtcg-tgtccaacaccgacacatataattacattaaattatatgattttctcaaattatta 23012459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 28296386 - 28296334
Alignment:
Q  130 gacaccgacagatattattacattgaattgtggcattttctcaaattattatc 182  Q
    |||||| ||| |||| | ||||||||||| || ||||||||||||||||||||    
T  28296386 gacaccaacacatatgagtacattgaattatgtcattttctcaaattattatc 28296334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 33950201 - 33950111
Alignment:
Q  123 ggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtc 213  Q
    ||||||||||||||||| |||| |||||||| |||| ||  ||||||||||||||||| | |    || ||||||||||||||||| ||||    
T  33950201 ggtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaattattagcggcgttgaagtgtcagtgttcgtgttatgtc 33950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 12077869 - 12077809
Alignment:
Q  147 ttacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgt 207  Q
    |||||||||||| ||  ||||||||||||||||| |||||  || ||||||||||||||||    
T  12077869 ttacattgaattatgtgattttctcaaattattaacagtattgacgtgtcagtgttcgtgt 12077809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 56049939 - 56049864
Alignment:
Q  125 tgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgt 201  Q
    ||||||||||||||| |||| ||||||||||| | || || ||||||||||||||||| ||  ||||||||| ||||    
T  56049939 tgtctgacaccgacacatatgattacattgaactatgtca-tttctcaaattattatcggtgtcgatgtgtccgtgt 56049864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 5654608 - 5654647
Alignment:
Q  146 attacattgaattgtggcattttctcaaattattatcagt 185  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  5654608 attacattgaattatgtcattttctcaaattattatcagt 5654647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 18513243 - 18513294
Alignment:
Q  131 acaccgacagatattattacattgaattgtggcattttctcaaattattatc 182  Q
    |||| |||| |||| ||||||||||||| || ||||||||||||||||||||    
T  18513243 acactgacacatatgattacattgaattatgtcattttctcaaattattatc 18513294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 43299973 - 43300024
Alignment:
Q  131 acaccgacagatattattacattgaattgtggcattttctcaaattattatc 182  Q
    |||||| ||||||| ||||||||||||| ||  |||||||||||||||||||    
T  43299973 acaccggcagatatgattacattgaattatgtaattttctcaaattattatc 43300024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 48139345 - 48139267
Alignment:
Q  106 ggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 185  Q
    |||||||||||||||||| ||||||||| | ||| |||| |||||||| |||| ||  ||| ||||||||||||| ||||    
T  48139345 ggtgtcgaacatgtgtcg-tgtctgacatcaacacatataattacattaaattatgagattatctcaaattattaacagt 48139267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 34515892 - 34515958
Alignment:
Q  147 ttacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtc 213  Q
    ||||| |||||| || ||||||||  |||||||||| ||  ||| ||||||||||||||||||||||    
T  34515892 ttacactgaattatgtcattttcttgaattattatccgtgtcgacgtgtcagtgttcgtgttgtgtc 34515958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 10546190 - 10546153
Alignment:
Q  146 attacattgaattgtggcattttctcaaattattatca 183  Q
    ||||||||||||| || |||||||||||||||||||||    
T  10546190 attacattgaattatgtcattttctcaaattattatca 10546153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 5225614 - 5225662
Alignment:
Q  130 gacaccgacagatattattacattgaattgtggcattttctcaaattat 178  Q
    |||||||||| |||||||| ||||||||| || |||| |||||||||||    
T  5225614 gacaccgacacatattattgcattgaattatgtcattatctcaaattat 5225662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 8423690 - 8423769
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 180  Q
    ||||||||||||| |||  ||||| |||| ||||||||||  ||| |||||| |||||| ||  |||||||||||||||||    
T  8423690 tgtcccggtgtcggacagctgtcg-tgtccgacaccgacatttataattacactgaattatgtgattttctcaaattatta 8423769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 14465299 - 14465347
Alignment:
Q  134 ccgacagatattattacattgaattgtggcattttctcaaattattatc 182  Q
    |||||| |||| |||| |||||||| || ||||||||||||||||||||    
T  14465299 ccgacacatatgattaaattgaattatgtcattttctcaaattattatc 14465347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 12985456 - 12985399
Alignment:
Q  124 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattat 181  Q
    ||||| |||||||||| |||| ||||||||||||| ||  ||||||||||||||||||    
T  12985456 gtgtccgacaccgacatatatgattacattgaattatgtgattttctcaaattattat 12985399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 44462167 - 44462227
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtg 161  Q
    ||||||||||||| |||||| ||| ||||||||||||||| |||| |||| |||||||||||    
T  44462167 tgtcccggtgtcggacatgtatcg-tgtctgacaccgacacatatgattaaattgaattgtg 44462227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 44469700 - 44469760
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtg 161  Q
    ||||||||||||| |||||| ||| ||||||||||||||| |||| |||| |||||||||||    
T  44469700 tgtcccggtgtcggacatgtatcg-tgtctgacaccgacacatatgattaaattgaattgtg 44469760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 12606825 - 12606885
Alignment:
Q  125 tgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 185  Q
    ||||||||||||||| |||| ||||||||||||| |   ||||||||||||||||| ||||    
T  12606825 tgtctgacaccgacacatataattacattgaattatatgattttctcaaattattagcagt 12606885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 7616866 - 7616904
Alignment:
Q  146 attacattgaattgtggcattttctcaaattattatcag 184  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  7616866 attacattgaattgtgtcattttctcaaattatcatcag 7616904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 31236580 - 31236633
Alignment:
Q  132 caccgacagatattattacattgaattgtggcattttctcaaattattatcagt 185  Q
    |||||||| |||| ||||||||||||| ||  ||||||||||||||||| ||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattattagcagt 31236633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 3508108 - 3508056
Alignment:
Q  132 caccgacagatattattacattgaattgtggcattttctcaaattattatcag 184  Q
    |||| ||| |||| ||||||||||||| ||  |||||||||||||||||||||    
T  3508108 caccaacacatatgattacattgaattatgttattttctcaaattattatcag 3508056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 14134763 - 14134707
Alignment:
Q  124 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 180  Q
    |||| ||||||||||| |||| |||||| |||||| ||  |||||||||||||||||    
T  14134763 gtgtttgacaccgacatatataattacactgaattatgtgattttctcaaattatta 14134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 28819246 - 28819194
Alignment:
Q  133 accgacagatattattacattgaattgtggcattttctcaaattattatcagt 185  Q
    ||||||| |||| ||| |||||| || || |||||||||||||||||||||||    
T  28819246 accgacacatatgattgcattgagttatgccattttctcaaattattatcagt 28819194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 33405356 - 33405475
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagt 199  Q
    ||||| ||||||  |||||||||| |||| |||||||||| |||| |||||| | |||| ||   |||||||||||||||| |||  ||  |||||||||    
T  33405356 tgtccaggtgtcagacatgtgtcg-tgtccgacaccgacacatataattacactaaattatgtgtttttctcaaattattaacagggccagtgtgtcagt 33405454  T
Q  200 gttcgtgttgtgtccaatgtc 220  Q
    || | ||| ||||||| ||||    
T  33405455 gtccatgtcgtgtccagtgtc 33405475  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 34201058 - 34201098
Alignment:
Q  141 atattattacattgaattgtggcattttctcaaattattat 181  Q
    |||| ||||||||||||| || |||||||||||||||||||    
T  34201058 atataattacattgaattatgtcattttctcaaattattat 34201098  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 28715382 - 28715303
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 180  Q
    ||||||||||||||||| |||||| |||| ||||||||||  | | |||||| |||||| || |||||| |||||||||||    
T  28715382 tgtcccggtgtcgaacacgtgtcg-tgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaattatta 28715303  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 9617492 - 9617442
Alignment:
Q  130 gacaccgacagatattattacattgaattgtggcattttctcaaattatta 180  Q
    |||||||||| |||| ||||||||||||| ||  |||||||||||||||||    
T  9617492 gacaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 12236746 - 12236688
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaatt 158  Q
    |||||||||| ||||||||||||||||| | ||| ||||| |||  |||||||||||||    
T  12236746 tgtcccggtgccgaacatgtgtcggtgtttaacatcgacacatacgattacattgaatt 12236688  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 30851664 - 30851605
Alignment:
Q  124 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 185  Q
    ||||| |||||||||| |||| ||||||||||||||||  ||||||| ||||||||| ||||    
T  30851664 gtgtccgacaccgacacatataattacattgaattgtg--attttcttaaattattagcagt 30851605  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 9629441 - 9629392
Alignment:
Q  130 gacaccgacagatattattacattgaattgtggcattttctcaaattatt 179  Q
    |||||||||| |||| ||||||||||||| ||  ||||||||||||||||    
T  9629441 gacaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 2140499 - 2140535
Alignment:
Q  147 ttacattgaattgtggcattttctcaaattattatca 183  Q
    |||||||||||| || |||||||||||||||||||||    
T  2140499 ttacattgaattatgtcattttctcaaattattatca 2140535  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 7265588 - 7265644
Alignment:
Q  124 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 180  Q
    ||||| |||||||||| |||| |||||| |||||| ||  |||||||||||||||||    
T  7265588 gtgtccgacaccgacacatataattacactgaattatgtgattttctcaaattatta 7265644  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 7378043 - 7377991
Alignment:
Q  124 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaatt 176  Q
    ||||| |||||||||| |||| ||||||||||||| ||  |||||||||||||    
T  7378043 gtgtccgacaccgacacatataattacattgaattatgtgattttctcaaatt 7377991  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 9024177 - 9024225
Alignment:
Q  130 gacaccgacagatattattacattgaattgtggcattttctcaaattat 178  Q
    ||||| |||| |||| ||||||||||||| || ||||||||||||||||    
T  9024177 gacactgacacatatgattacattgaattatgtcattttctcaaattat 9024225  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 10158051 - 10157995
Alignment:
Q  121 tcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaatta 177  Q
    ||||||||||  ||||||| || | ||||||||||||| || |||||||||||||||    
T  10158051 tcggtgtctggtaccgacacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 12627549 - 12627628
Alignment:
Q  100 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 180  Q
    |||| |||||||| |||||||| |||||| |||| ||||| ||||||||||| |||||| ||  ||||| ||| |||||||    
T  12627549 tgtctcggtgtcggacatgtgt-ggtgtccgacatcgacacatattattacactgaattatgtgattttttcacattatta 12627628  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 13851800 - 13851704
Alignment:
Q  124 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtccaatgtc 220  Q
    ||||| |||| ||||| |||| |||||| ||||||  |  ||||||||||||||||| | ||  ||| |||||||||| ||||| |||| |||||||    
T  13851800 gtgtcagacatcgacacatataattacactgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgttcaatgtc 13851704  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 19040427 - 19040360
Alignment:
Q  112 gaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 180  Q
    |||||||||||| |||| ||||| |||| |||| |||||| |||||| ||  |||||||||||||||||    
T  19040427 gaacatgtgtcg-tgtccgacacagacacatataattacactgaattatgtgattttctcaaattatta 19040360  T

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Target: scaffold0571 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 7728 - 7685
Alignment:
Q  150 cattgaattgtggcattttctcaaattattatcagtaccgatgt 193  Q
    ||||||||| || |||||||||||||||||||||||||| ||||    
T  7728 cattgaattatgtcattttctcaaattattatcagtaccaatgt 7685  T

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Target: scaffold0598 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 8071 - 8131
Alignment:
Q  147 ttacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgt 207  Q
    ||||| |||||| || |||||||||||||||||||| ||| ||| ||||| |||| |||||    
T  8071 ttacactgaattatgtcattttctcaaattattatccgtatcgacgtgtcggtgtccgtgt 8131  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 240021 - 240073
Alignment:
Q  129 tgacaccgacagatattattacattgaattgtggcattttctcaaattattat 181  Q
    ||||||||||| |||| ||||||||||||| |   ||||||||||||||||||    
T  240021 tgacaccgacacatatgattacattgaattatattattttctcaaattattat 240073  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 225285 - 225353
Alignment:
Q  146 attacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtcc 214  Q
    ||||||||| ||| || |||||||||||||||||||| ||  ||  |||||||||| ||||| ||||||    
T  225285 attacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtcc 225353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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