View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0433_low_6 (Length: 288)
Name: NF0433_low_6
Description: NF0433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0433_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 19962396 - 19962499
Alignment:
| Q |
7 |
tcttcatcttcctttcctcaacttcctcccctaccccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgt |
106 |
Q |
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|||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| |
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| T |
19962396 |
tcttcatcatcctttcctcaccttcttcccctacccc-cgtatcaccaccatcatccatggcggcaccaactttggtcgttttgtctctactgcaaccgt |
19962494 |
T |
|
| Q |
107 |
ctctg |
111 |
Q |
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||||| |
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| T |
19962495 |
ctctg |
19962499 |
T |
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Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 1971415 - 1971487
Alignment:
| Q |
39 |
accccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1971415 |
accctccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg |
1971487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 1971363 - 1971400
Alignment:
| Q |
7 |
tcttcatcttcctttcctcaacttcctcccctaccccc |
44 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||| |
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| T |
1971363 |
tcttcatcttcctttcctcaccttcttcccctaccccc |
1971400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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