View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0433_low_9 (Length: 232)
Name: NF0433_low_9
Description: NF0433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0433_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 7368215 - 7368077
Alignment:
| Q |
1 |
acttggaaggatcgcattaaaattgttagtttagttggtttgttattcttaacgaacagcctataactaacttattgagagtgattatatactctaatac |
100 |
Q |
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| T |
7368215 |
acttggaaggatcgcattaaaattgttagtttagttggtttgttattcttaacgagcaacctataactaacttattgagagtgattatatactctaatac |
7368116 |
T |
|
| Q |
101 |
attagaaacaaagaaaataggaagaaacttctatgtgtg |
139 |
Q |
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| T |
7368115 |
attagaaacaaagaaaataggaagaaacttctatgtgtg |
7368077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 7377196 - 7377088
Alignment:
| Q |
19 |
aaaattgttagtttagttggtttgttattcttaacgaacagcctataactaacttattgagagtgattatatactctaatacattagaaacaaagaaaat |
118 |
Q |
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||||||| |||||||||| |||||||||||||||| ||| || ||| ||| ||||||||| |||| |||||||||||| |||| ||||| ||||||| |
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| T |
7377196 |
aaaattgctagtttagttagtttgttattcttaacaaactaactgtaattaatttattgagactgatcctatactctaata-attaaaaacagagaaaat |
7377098 |
T |
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| Q |
119 |
aggaagaaac |
128 |
Q |
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| T |
7377097 |
aggaagaaac |
7377088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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