View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0434_high_2 (Length: 492)
Name: NF0434_high_2
Description: NF0434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0434_high_2 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 95 - 449
Target Start/End: Complemental strand, 44662779 - 44662424
Alignment:
| Q |
95 |
cagaattgttgccaacggttgtagtcaatgccaagctctcaagagaagagaaacatgatgaagagaacattattggacttacaaaccttgatgtcacgaa |
194 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44662779 |
cagaattgttgccaacggttgtagtcaatgccaaactctcaagagaagagaaacatgatgaagagaacattattggacttacaaaccttgatgtcacgaa |
44662680 |
T |
|
| Q |
195 |
gtccataggtgaaacagatgccaatttggatgcagtaattgctcactatgctcagactataaccatgtacaacatgcgtaacttaggtaggcttttggtg |
294 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44662679 |
gtccataggtgaaacagatgccaatttggatgcaataattgctcactatgctcagactataaccaagtacaacatgcgtaacttaggtaggcttttggtg |
44662580 |
T |
|
| Q |
295 |
cttcatatttttctatctttagatactattttataccaaaaaataccttgtagacaattaattcaatctcttattgattgacatttataga-tgacttat |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44662579 |
cttcatatttttctatctttagatactattttataccaaaaaataccttgtagacaattaattcaatctcttattgattgacatttatagaccgacttat |
44662480 |
T |
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| Q |
394 |
cggattttgagtggtggtcgaatctgatcgtttgaagcatcgtaccttcgccggct |
449 |
Q |
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| T |
44662479 |
cggattttgagtggtggtcgaatctgatcgtttgaagcatcgtaccttcgtcggct |
44662424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 205 - 316
Target Start/End: Complemental strand, 44685083 - 44684974
Alignment:
| Q |
205 |
gaaacagatgccaatttggatgcagtaattgctcactatgctcagactataaccatgtacaacatgcgtaacttaggtaggcttttggtgcttcatattt |
304 |
Q |
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|||| ||||||||||||||||||| ||||||||| |||||| ||||||||| || ||||||| | ||||||||||||||| |||||||||||| |||| |
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| T |
44685083 |
gaaaaagatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttc--attt |
44684986 |
T |
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| Q |
305 |
ttctatctttag |
316 |
Q |
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|||||| ||||| |
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| T |
44684985 |
ttctatatttag |
44684974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 431
Target Start/End: Complemental strand, 42919751 - 42919709
Alignment:
| Q |
389 |
cttatcggattttgagtggtggtcgaatctgatcgtttgaagc |
431 |
Q |
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| T |
42919751 |
cttatcggatgttgagtggtgggcgactctgatcgtttgaagc |
42919709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 319
Target Start/End: Original strand, 29339523 - 29339748
Alignment:
| Q |
101 |
tgttgccaacggttgtagtcaatgccaagctctcaagagaagagaaacatg---------atgaagagaacattattggacttacaaaccttgatgtcac |
191 |
Q |
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|||||||||| ||||| | ||||||||| |||||| ||||||||| ||||| |||||||| |||||| | ||||||| ||| ||| | |||| |
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| T |
29339523 |
tgttgccaacagttgttggcaatgccaaactctcaggagaagagagacatgcaaatattcatgaagaggacattaatagacttaccaacattgctatcac |
29339622 |
T |
|
| Q |
192 |
gaagtccataggtgaaacagatgccaatttggatgcagtaattgctcactatgctcagactataaccatgtacaacatgcgtaacttaggtaggcttttg |
291 |
Q |
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| | ||| |||||||| ||||||||||| |||||||||||| ||||||||| ||||||||| || ||||||| |||| ||||||||| || ||||| |
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| T |
29339623 |
acaatgcattggtgaaactgatgccaatttagatgcagtaattactcactatgtggagactataaacaagtacaacttgcgcaacttaggtgggtttttg |
29339722 |
T |
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| Q |
292 |
gtgcttcatatttttctatctttagata |
319 |
Q |
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||||| ||||||||||||||||||| |
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| T |
29339723 |
atgctt--gatttttctatctttagata |
29339748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 152 - 310
Target Start/End: Original strand, 29352745 - 29352903
Alignment:
| Q |
152 |
atgaagagaacattattggacttacaaaccttgatgtcacgaagtccataggtgaaacagatgccaatttggatgcagtaattgctcactatgctcagac |
251 |
Q |
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|||||||| |||||| | ||||||| ||| ||| | |||| | | ||| |||||||| ||||||||||| |||||||||||||||||||||| |||| |
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| T |
29352745 |
atgaagaggacattaatagacttaccaacattgctatcacacaatgcattggtgaaactgatgccaatttagatgcagtaattgctcactatgtggagac |
29352844 |
T |
|
| Q |
252 |
tataaccatgtacaacatgcgtaacttaggtaggcttttggtgcttcatatttttctat |
310 |
Q |
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||||| || |||||| || |||||||||||||| ||||| ||||| || ||| ||||| |
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| T |
29352845 |
tataaacaaatacaacttgtgtaacttaggtaggtttttgatgcttgatttttctctat |
29352903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 432
Target Start/End: Original strand, 1799254 - 1799287
Alignment:
| Q |
399 |
tttgagtggtggtcgaatctgatcgtttgaagca |
432 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
1799254 |
tttgagtggtggtcgaagctgatcgtttgaagca |
1799287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 1918454 - 1918498
Alignment:
| Q |
386 |
tgacttatcggattttgagtggtggtcgaatctgatcgtttgaag |
430 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
1918454 |
tgacatatcggatgttgagtggtggtcgaatctgatcgtttgaag |
1918498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 431
Target Start/End: Original strand, 18580 - 18622
Alignment:
| Q |
389 |
cttatcggattttgagtggtggtcgaatctgatcgtttgaagc |
431 |
Q |
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|||||||||| ||||||||||| ||| |||||||||||||||| |
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| T |
18580 |
cttatcggatgttgagtggtgggcgactctgatcgtttgaagc |
18622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 432
Target Start/End: Original strand, 23264820 - 23264849
Alignment:
| Q |
403 |
agtggtggtcgaatctgatcgtttgaagca |
432 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23264820 |
agtggtggtcgaatctgatcgtttgaagca |
23264849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 36796715 - 36796747
Alignment:
| Q |
400 |
ttgagtggtggtcgaatctgatcgtttgaagca |
432 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |
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| T |
36796715 |
ttgagtggtggtcgcatctgatcgtttgaagca |
36796747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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