View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0434_high_4 (Length: 428)
Name: NF0434_high_4
Description: NF0434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0434_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 30 - 420
Target Start/End: Original strand, 43016744 - 43017134
Alignment:
| Q |
30 |
aaagaaaaatccacacttacaagaagtccaagacacctctggaaactgttttttgtacagaaaactgaatgcaagaaacaggagagagctcccaaagcaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016744 |
aaagaaaaatccacacttacaagaagtccaagacacctctggaaactgttttttgtacagaaaactgaatgcaagaaacaggagagagctcccaaagcaa |
43016843 |
T |
|
| Q |
130 |
tcaattccaaacacagaaccaatcagggctgcagcttgacacaccagtagaaaacccccaaacacagtcgtgagcttttgacatcgttttcattcgctgg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43016844 |
tcaattccaaacacagaaccaatcagggctgcagcttgacacaccagtagaaaacccccaaacacagtcgtgagcttttgacaccgttttcattcgctgg |
43016943 |
T |
|
| Q |
230 |
tggaagaaaagaaaacggaagggaaaagagaaaggggtaggcaagaagatagtcatttgatgatcttgatgggatattacgtgatagtaacaagcatcta |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016944 |
tggaagaaaagaaaacggaagggaaaagagaaaggggtaggcaagaagatagtcatttgatgatcttgatgggatattacgtgatagtaacaagcatcta |
43017043 |
T |
|
| Q |
330 |
tatatcaagcacgaacacagacaacggacacaacaaagacactaacatgttgaaacaattaattctacacctgcataatcgagttcatctc |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43017044 |
tatatcaagcacgaacacagacaacggacacaacaaagacactaacatgttgaaacaattaattctacacctgcataatcgagttcatctc |
43017134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 115 times since January 2019
Visitors: 3248