View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0434_low_10 (Length: 355)
Name: NF0434_low_10
Description: NF0434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0434_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 38892642 - 38892491
Alignment:
| Q |
8 |
aaacaaaggaaaaagaatcccaacaactaaattggcatctcagactctaacaattataagcaccacccaaaatttatttaaccctaaatatcacaaaaac |
107 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38892642 |
aaacaaagaaaaaagaatcccaacaactaaattggcatctcagactctaacaattataagcaccacccaaaatttatttaaccctaaatatcacaaaaac |
38892543 |
T |
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| Q |
108 |
ccaggaaattgaatgaaccgtcacaaaaatacaaactaattgaatgacacta |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38892542 |
ccaggaaattgaatgaaccgtcacaaaaatacaaactaattgaatgacacta |
38892491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 38892348 - 38892320
Alignment:
| Q |
298 |
gagtgtatgatgaaagaaagggtgcaata |
326 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38892348 |
gagtgtatgatgaaagaaagggtgcaata |
38892320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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