View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0434_low_12 (Length: 313)
Name: NF0434_low_12
Description: NF0434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0434_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 39390957 - 39390725
Alignment:
| Q |
16 |
gatgtccagaatcccattgttattgaccagagttatggcaaaaaagatagagtggtaagcaaattaacaattgaaacctcctatagtttatcattttgcc |
115 |
Q |
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| T |
39390957 |
gatgtccagaatcccattgttattgaccagagttatggcaaaaaagagagagtggtaagcaaattaacaattgaaacctcctatagtttatcattttgct |
39390858 |
T |
|
| Q |
116 |
agcatttaacaagtttccaaaaattcttattaatgtgtgtacttgtttgtgagtagccttcaacttcggtgtggaagatcagtgatgctcatttccgtag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39390857 |
agcatttaacaagtttccaaaaattcttattaatgtgtgtacttgtttgtgagtagccttcaacttcggtgtggaagatcagtgatgctcatttccgtag |
39390758 |
T |
|
| Q |
216 |
gataaaaggaacaacagtctcaaacattccggt |
248 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
39390757 |
gataaaaggaacaacagtctcaaacattccggt |
39390725 |
T |
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