View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0434_low_14 (Length: 309)
Name: NF0434_low_14
Description: NF0434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0434_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 29 - 298
Target Start/End: Original strand, 42083433 - 42083702
Alignment:
| Q |
29 |
acttaaccctaaccttaatcccactttccctcccaaatcctcaattaattatgtgtggggtccatataagctataatcccaatttcaaatttgaattcaa |
128 |
Q |
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| T |
42083433 |
acttaaccctaaccttaatcccactttccctcccaaatcctcaattaattatgtgtggggcccatataagctataatcccaattccaaatttgaattcga |
42083532 |
T |
|
| Q |
129 |
gttttccctcccatcattttgtttgtttccaatgtcatgtcatcattgttgagtaacatcattaatactacataacactgttaatcaaggtgccttaatg |
228 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
42083533 |
gttttccctctcatcattttgtttgtttccaatgtcatgtcatcattgttgactaacatcattaatactacataacaccgttaatcaaagtgccttaatg |
42083632 |
T |
|
| Q |
229 |
actttgtatgccacatctaaatttgttcatttttcaaaaagactaaattaattgttgttttccctttcat |
298 |
Q |
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||||||| ||||||||||| ||||||||||||||||| |||| ||||||||||||| |||| ||||||| |
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| T |
42083633 |
actttgtcagccacatctaactttgttcatttttcaaagagacaaaattaattgttgctttctctttcat |
42083702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 45207411 - 45207562
Alignment:
| Q |
29 |
acttaaccctaaccttaatcccactttccctcccaaatcctcaattaattatgtgtggggtccatataagctataatcccaatttcaaatttgaattcaa |
128 |
Q |
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| T |
45207411 |
acttaaccctaaccttaatcccactttccctcccatatcctcaattaattatgtgaggggtccatataagctataatcccaattt--------------- |
45207495 |
T |
|
| Q |
129 |
gttttccctcccatcattttgtttgtttccaatgtcatgtcatcattgttgagtaacatcattaatactacata |
202 |
Q |
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| T |
45207496 |
-------ctcccatcattttgtttgtttccaatgtcatgtcatcattgttgagtaacatcattaatactacata |
45207562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 45207789 - 45207879
Alignment:
| Q |
208 |
gttaatcaaggtgccttaatgactttgtatgccacatctaaatttgttcatttttcaaaaagactaaattaattgttgttttccctttcat |
298 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
45207789 |
gttaatcaaggtgccttaatgactttgtatggcacatctaaatttgttcatttttcaaagagacaaaattaattgttgttttccctttcat |
45207879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 27175021 - 27174969
Alignment:
| Q |
111 |
tttcaaatttgaattcaagttttccctcccatcattttgtttgtttccaatgt |
163 |
Q |
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| T |
27175021 |
tttcaaatttgaattcaaattttccctcccatcactttgtttgtttccaatgt |
27174969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 675507 - 675464
Alignment:
| Q |
29 |
acttaaccctaaccttaatcccactttccctcccaaatcctcaa |
72 |
Q |
| |
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|||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
675507 |
acttaaccctaatcctaatcccactttccctcccaaatcctcaa |
675464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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