View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0434_low_18 (Length: 244)
Name: NF0434_low_18
Description: NF0434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0434_low_18 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0027 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 42603646 - 42603871
Alignment:
| Q |
17 |
gacatcatccttctttaaccactcgatttcctaccacgttaaatgatatgatcctaaacttgaccctatatggccaacgaacttaggctccgttttgtnn |
116 |
Q |
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| T |
42603646 |
gacatcatccttcttaaacaactcgatttcctaccacgttaaatgacatgatcctaaacttgaacctatatggccaacgaacttaggctccgttttgtaa |
42603745 |
T |
|
| Q |
117 |
nnnnntaaatagtgaatagttgataaactaattttataatagatgacgaacttattgcggaagatttataaaatagcttaaagcttatagcatataagtt |
216 |
Q |
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| T |
42603746 |
aaaa-taaatagtgaatagttgataaactagttt-ataatagatgacgaatttattgcggaatatttataaaatagcttaaagcttatagcatataagtt |
42603843 |
T |
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| Q |
217 |
aattgattgaatttgtagtgtttaataa |
244 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42603844 |
aattgattgaatttgtagtgtttaataa |
42603871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 8151 - 8117
Alignment:
| Q |
210 |
ataagttaattgattgaatttgtagtgtttaataa |
244 |
Q |
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| T |
8151 |
ataagttaattgattgaatttgtagtgtttgataa |
8117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 19683440 - 19683474
Alignment:
| Q |
210 |
ataagttaattgattgaatttgtagtgtttaataa |
244 |
Q |
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| T |
19683440 |
ataagttaattgattgaatttgtagtgtttgataa |
19683474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 12238209 - 12238250
Alignment:
| Q |
198 |
agcttatagcatataagttaattgattgaatttgtagtgttt |
239 |
Q |
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| T |
12238209 |
agcttataacagataagctaattgattgaatttgtagtgttt |
12238250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 27863987 - 27863911
Alignment:
| Q |
168 |
ttattgcggaagatttataaaatagcttaaagcttatagcatataagttaattgattgaatttgtagtgtttaataa |
244 |
Q |
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|||| ||||| |||||||||| | |||| ||||||||| | |||| ||| |||||||||||||||||||| |||| |
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| T |
27863987 |
ttatagcggatgatttataaaccaacttatagcttatagaaaataatttagctgattgaatttgtagtgtttgataa |
27863911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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