View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0434_low_19 (Length: 235)
Name: NF0434_low_19
Description: NF0434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0434_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 23434350 - 23434162
Alignment:
| Q |
1 |
tatatcaaatgagtgaagaagttaatgtgagagatgagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtcactacaaat |
100 |
Q |
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| T |
23434350 |
tatatcaaatgagtgaagaagttaatgtgagagatgagaggaatcattaataaccatcagatacacatcaacggttagcatttaattagtcactacaaat |
23434251 |
T |
|
| Q |
101 |
tgagtcacactctatcccttaatcttcatctccctcaatgacattttctccacacattcacgttccagtttattttctttattttttct |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23434250 |
tgagtcacactctatcccttaatcttcatctccctcaatggcattttctccacacattcacgttcctgtttattttctttattttttct |
23434162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 19638882 - 19638754
Alignment:
| Q |
26 |
tgtgagaga-tgagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatc |
124 |
Q |
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||||||||| |||||||||| |||||||||| |||||| | |||||||||| ||||||| |||||||||||| | | ||||||||| ||||||| |||| |
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| T |
19638882 |
tgtgagagagtgagaggaataattaataaccatcagatctatatcaacggttggcatttagttagtcactacagacttagtcacactgtatccctcaatc |
19638783 |
T |
|
| Q |
125 |
ttcatctccctcaatgacattttctccac |
153 |
Q |
| |
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| T |
19638782 |
ttcatctcccttcctgacatattctccac |
19638754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 153
Target Start/End: Complemental strand, 20509384 - 20509267
Alignment:
| Q |
36 |
gagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatcttcatctccct |
135 |
Q |
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||||||||| |||||||||| |||||| | |||||||||| ||||||| |||||||||||| | | ||||||||| ||||||| ||||||||||||||| |
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| T |
20509384 |
gagaggaataattaataaccatcagatctatatcaacggttggcatttagttagtcactacagacttagtcacactgtatccctcaatcttcatctccct |
20509285 |
T |
|
| Q |
136 |
caatgacattttctccac |
153 |
Q |
| |
|
|||||| |||||||| |
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| T |
20509284 |
tcctgacatattctccac |
20509267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 14099265 - 14099137
Alignment:
| Q |
26 |
tgtgagaga-tgagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatc |
124 |
Q |
| |
|
||||||||| |||||||||| |||||||||| || ||| | |||||||||| ||||||| |||||||||||| | | ||||||||| ||||||| |||| |
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| T |
14099265 |
tgtgagagagtgagaggaataattaataaccatctgatctatatcaacggttggcatttagttagtcactacagacttagtcacactgtatccctcaatc |
14099166 |
T |
|
| Q |
125 |
ttcatctccctcaatgacattttctccac |
153 |
Q |
| |
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||||||||||| |||||| |||||||| |
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|
| T |
14099165 |
ttcatctcccttcctgacatattctccac |
14099137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 153
Target Start/End: Complemental strand, 30785644 - 30785527
Alignment:
| Q |
36 |
gagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatcttcatctccct |
135 |
Q |
| |
|
||||||||| |||||||||| |||||| | |||||||||| |||||| |||||||||||| | | ||||||||| ||||||| ||||||||||||||| |
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|
| T |
30785644 |
gagaggaataattaataaccatcagatctatatcaacggttgacatttagttagtcactacagacttagtcacactatatccctcaatcttcatctccct |
30785545 |
T |
|
| Q |
136 |
caatgacattttctccac |
153 |
Q |
| |
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|||||| |||||||| |
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|
| T |
30785544 |
tcctgacatattctccac |
30785527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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