View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0434_low_2 (Length: 581)
Name: NF0434_low_2
Description: NF0434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0434_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 37759505 - 37759890
Alignment:
| Q |
1 |
aggcataggtgataagtgacctaataaagaggtgggggcagtagcgcataatattaggaccgtttctttttccacctattgatttctcgcatgctttatc |
100 |
Q |
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| T |
37759505 |
aggcctaggtgataagtgacctaataaagaggtgggggcagtagcacataatattaggatcgtttcttttttcacctattgatttctcgcgtgctttacc |
37759604 |
T |
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| Q |
101 |
gatttcggtttttattaatttagaaaatgtaatatcttttaaaa----------ctctcttttaatcacataattttttcagattttataattcgaataa |
190 |
Q |
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| T |
37759605 |
gatttcagtttttattaatttaaaaagtgtaacatcttttaaaatacgttaaaacacttttctaatcacaccattttttcagattttataattcgaataa |
37759704 |
T |
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| Q |
191 |
ggttagaggatgagacaagaacttctctgacattagtagattgacaattatgccaaaaggtcttgggtcaatttatacaacaacatcaataagttgctaa |
290 |
Q |
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| T |
37759705 |
ggttagaggatgagacaaaaacttctctgacattagtagattgacaattatgccaaaaggtcttgggtcaatttatacaacaacatcaataagttgccaa |
37759804 |
T |
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| Q |
291 |
gtgctacaagaaataacgaatggctcttattaaacaaaaatataggggataatcaaaatgttttcaatcacagttgttttatgttg |
376 |
Q |
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| T |
37759805 |
gtgctgcaagaaataacgaatggctcttattaaataaaaatataggggattttcaaaatgttttcaatcacagttgttttatgttg |
37759890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 372 - 463
Target Start/End: Original strand, 37759989 - 37760080
Alignment:
| Q |
372 |
tgttggatgagtgttcaaatccagtccacatcaatgccaactgactgcttaacaaattcctaaaatatttttagtgtttttaggtttgtaga |
463 |
Q |
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| T |
37759989 |
tgttggatgagtgttcaaatccattccacatcaatgccaactgactgcttaacaaattcataaaatatttttagtgtttttaggtttgtaga |
37760080 |
T |
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