View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0434_low_21 (Length: 214)
Name: NF0434_low_21
Description: NF0434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0434_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 23434350 - 23434219
Alignment:
| Q |
1 |
tatatcaaatgagtgaagaagttaatgtgagagatgagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtcactacaaat |
100 |
Q |
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| T |
23434350 |
tatatcaaatgagtgaagaagttaatgtgagagatgagaggaatcattaataaccatcagatacacatcaacggttagcatttaattagtcactacaaat |
23434251 |
T |
|
| Q |
101 |
tgagtcacactctatcccttaatcttcatctc |
132 |
Q |
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| T |
23434250 |
tgagtcacactctatcccttaatcttcatctc |
23434219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 19638882 - 19638775
Alignment:
| Q |
26 |
tgtgagaga-tgagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatc |
124 |
Q |
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||||||||| |||||||||| |||||||||| |||||| | |||||||||| ||||||| |||||||||||| | | ||||||||| ||||||| |||| |
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| T |
19638882 |
tgtgagagagtgagaggaataattaataaccatcagatctatatcaacggttggcatttagttagtcactacagacttagtcacactgtatccctcaatc |
19638783 |
T |
|
| Q |
125 |
ttcatctc |
132 |
Q |
| |
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|||||||| |
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|
| T |
19638782 |
ttcatctc |
19638775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 20509384 - 20509288
Alignment:
| Q |
36 |
gagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatcttcatctc |
132 |
Q |
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| T |
20509384 |
gagaggaataattaataaccatcagatctatatcaacggttggcatttagttagtcactacagacttagtcacactgtatccctcaatcttcatctc |
20509288 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 14099265 - 14099158
Alignment:
| Q |
26 |
tgtgagaga-tgagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatc |
124 |
Q |
| |
|
||||||||| |||||||||| |||||||||| || ||| | |||||||||| ||||||| |||||||||||| | | ||||||||| ||||||| |||| |
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| T |
14099265 |
tgtgagagagtgagaggaataattaataaccatctgatctatatcaacggttggcatttagttagtcactacagacttagtcacactgtatccctcaatc |
14099166 |
T |
|
| Q |
125 |
ttcatctc |
132 |
Q |
| |
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|||||||| |
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|
| T |
14099165 |
ttcatctc |
14099158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 30785644 - 30785548
Alignment:
| Q |
36 |
gagaggaatcattaataaccttcagatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatcttcatctc |
132 |
Q |
| |
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||||||||| |||||||||| |||||| | |||||||||| |||||| |||||||||||| | | ||||||||| ||||||| |||||||||||| |
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| T |
30785644 |
gagaggaataattaataaccatcagatctatatcaacggttgacatttagttagtcactacagacttagtcacactatatccctcaatcttcatctc |
30785548 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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