View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0434_low_4 (Length: 432)
Name: NF0434_low_4
Description: NF0434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0434_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 29 - 419
Target Start/End: Original strand, 37217828 - 37218217
Alignment:
| Q |
29 |
aaaactatttcaaaattgagtcaaccttgcatgttaggattcaaaaggaagcctatccgctccgcctaatcatgaatttcctcaaaattgctcctcccat |
128 |
Q |
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| T |
37217828 |
aaaactatttcaagattgagtcaaccttgcatgttaggattcaaaaggaagcctatccgctccgcctaatcatgaatttcctcaaaattgctcctcccat |
37217927 |
T |
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| Q |
129 |
tactggatatacattcgaacccaaatgctgactgctgaggtttcgttgcagggacttttgaaaactccctcaaaatattttgcgatggttaaaatccttg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37217928 |
tactggatatacattcgaacccaaatgctgactgctgaggtttcgttgcagggacttttgaaaactccctcaaaatattttgcgatggttaaaatcctcg |
37218027 |
T |
|
| Q |
229 |
caaaatggcttaaaacctgccacaatccaaatgcannnnnnnnccgtagtttccaataagaactaagaaggaatattcaaatcctagaacattatgagta |
328 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37218028 |
caaaatggcttaaaacctgccacaatccaaatgca-tttttgtccgtagtttccaataagaactaagaaggaatattcaaatcctagaacattatgagta |
37218126 |
T |
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| Q |
329 |
attttattttcaannnnnnnagaggtttctttacaatcatttgttgaacgctagataaacatctcttcgttatatttattcccccacatat |
419 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37218127 |
attttattttcattttttttagaggtttctttataatcatttgttgaacgctagataaacatctcttcgttatatttattaccccacatat |
37218217 |
T |
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