View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0434_low_6 (Length: 406)

Name: NF0434_low_6
Description: NF0434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0434_low_6
NF0434_low_6
[»] chr3 (2 HSPs)
chr3 (29-358)||(44901458-44901787)
chr3 (72-101)||(7671806-7671835)
[»] chr4 (3 HSPs)
chr4 (115-177)||(16601650-16601712)
chr4 (65-146)||(19842434-19842509)
chr4 (69-101)||(44957293-44957325)
[»] chr5 (2 HSPs)
chr5 (65-101)||(6560822-6560858)
chr5 (69-101)||(21605648-21605680)
[»] chr8 (3 HSPs)
chr8 (71-101)||(12801109-12801139)
chr8 (71-105)||(40548058-40548092)
chr8 (71-104)||(28090194-28090227)
[»] chr2 (3 HSPs)
chr2 (71-101)||(7467122-7467152)
chr2 (69-101)||(6884159-6884191)
chr2 (73-101)||(45690874-45690902)
[»] chr1 (4 HSPs)
chr1 (67-101)||(26011316-26011350)
chr1 (72-101)||(47209049-47209078)
chr1 (71-99)||(30547141-30547169)
chr1 (69-101)||(51184042-51184074)
[»] chr7 (3 HSPs)
chr7 (71-104)||(2088870-2088903)
chr7 (64-101)||(27800402-27800439)
chr7 (115-176)||(31311386-31311447)
[»] chr6 (3 HSPs)
chr6 (72-101)||(6975074-6975103)
chr6 (65-101)||(1371405-1371441)
chr6 (65-101)||(1379153-1379189)
[»] scaffold0604 (1 HSPs)
scaffold0604 (69-101)||(2020-2052)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 29 - 358
Target Start/End: Complemental strand, 44901787 - 44901458
Alignment:
Q  29 aggaaggtgtctccatgtcaatgtagatagatattgataagacaaattctatggtacacccaaaaatttgagtatactactaatgatacaccaaaccgtt 128  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||    
T  44901787 aggaaggtgtctccatgtcaatgtagatagatatcgataagacaaattctatggtacacccaaaaatttgagtatactattgatgataccccaaaccgtt 44901688  T
Q  129 aaattaataattaaatgacttgnnnnnnngaagaaaaagaattatttttaaagttggaagagtaaccatttatgtaatacaatcccacttgatttctatt 228  Q
    |||||||||||||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44901687 aaattaataattaaatgactagtttttttgaagaaaaagaattatttttaaagttggaagagtaaccatttatgtgatacaatcccacttgatttctatt 44901588  T
Q  229 tttaagttactacataaaatacagagatgttagatttttgactgaagttaaaagatgttagttgaagtttatgtttaaaatcacgggaaatttcacaaat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44901587 tttaagttactacataaaatacagagatgttagatttttgactgaagttaaaagatgttagttgaagtttatgtttaaaatcacgggaaatttcacaaat 44901488  T
Q  329 tacagtgaataataattttattgaagcact 358  Q
    ||||||||||||||||||||||||||||||    
T  44901487 tacagtgaataataattttattgaagcact 44901458  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 101
Target Start/End: Original strand, 7671806 - 7671835
Alignment:
Q  72 aaattctatggtacacccaaaaatttgagt 101  Q
    ||||||||||||||||||||||||||||||    
T  7671806 aaattctatggtacacccaaaaatttgagt 7671835  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 16601650 - 16601712
Alignment:
Q  115 tacaccaaaccgttaaattaataattaaatgacttgnnnnnnngaagaaaaagaattattttt 177  Q
    ||||||||| |||||||||||||||||||||| |||       ||||||||||||||||||||    
T  16601650 tacaccaaatcgttaaattaataattaaatgagttgtatttttgaagaaaaagaattattttt 16601712  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 19842434 - 19842509
Alignment:
Q  65 ataagacaaattctatggtacacccaaaaatttgagtatactactaatgatacaccaaaccgttaaattaataattaaatga 146  Q
    ||||| |||||||||||||||| |||||||||||||| ||| |       |||||||||  |||||||||||||||||||||    
T  19842434 ataaggcaaattctatggtacatccaaaaatttgagtgtacca------gtacaccaaattgttaaattaataattaaatga 19842509  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 44957325 - 44957293
Alignment:
Q  69 gacaaattctatggtacacccaaaaatttgagt 101  Q
    ||||||||||||||||||| |||||||||||||    
T  44957325 gacaaattctatggtacactcaaaaatttgagt 44957293  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 6560822 - 6560858
Alignment:
Q  65 ataagacaaattctatggtacacccaaaaatttgagt 101  Q
    ||||||||||||||||||||||||||| |||||||||    
T  6560822 ataagacaaattctatggtacacccaataatttgagt 6560858  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 21605648 - 21605680
Alignment:
Q  69 gacaaattctatggtacacccaaaaatttgagt 101  Q
    ||||||||||||||||||||||| |||||||||    
T  21605648 gacaaattctatggtacacccaacaatttgagt 21605680  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 101
Target Start/End: Original strand, 12801109 - 12801139
Alignment:
Q  71 caaattctatggtacacccaaaaatttgagt 101  Q
    |||||||||||||||||||||||||||||||    
T  12801109 caaattctatggtacacccaaaaatttgagt 12801139  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 40548092 - 40548058
Alignment:
Q  71 caaattctatggtacacccaaaaatttgagtatac 105  Q
    |||||||||||||||||| ||||||||||||||||    
T  40548092 caaattctatggtacacctaaaaatttgagtatac 40548058  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 28090194 - 28090227
Alignment:
Q  71 caaattctatggtacacccaaaaatttgagtata 104  Q
    ||||||||||||||||||||| ||||||||||||    
T  28090194 caaattctatggtacacccaataatttgagtata 28090227  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 101
Target Start/End: Original strand, 7467122 - 7467152
Alignment:
Q  71 caaattctatggtacacccaaaaatttgagt 101  Q
    |||||||||||||||||||||||||||||||    
T  7467122 caaattctatggtacacccaaaaatttgagt 7467152  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 6884159 - 6884191
Alignment:
Q  69 gacaaattctatggtacacccaaaaatttgagt 101  Q
    ||||||||||||||||||||||| |||||||||    
T  6884159 gacaaattctatggtacacccaacaatttgagt 6884191  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 101
Target Start/End: Complemental strand, 45690902 - 45690874
Alignment:
Q  73 aattctatggtacacccaaaaatttgagt 101  Q
    |||||||||||||||||||||||||||||    
T  45690902 aattctatggtacacccaaaaatttgagt 45690874  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 26011350 - 26011316
Alignment:
Q  67 aagacaaattctatggtacacccaaaaatttgagt 101  Q
    |||||||||| ||||||||||||||||||||||||    
T  26011350 aagacaaattttatggtacacccaaaaatttgagt 26011316  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 101
Target Start/End: Original strand, 47209049 - 47209078
Alignment:
Q  72 aaattctatggtacacccaaaaatttgagt 101  Q
    ||||||||||||||||||||||||||||||    
T  47209049 aaattctatggtacacccaaaaatttgagt 47209078  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 30547169 - 30547141
Alignment:
Q  71 caaattctatggtacacccaaaaatttga 99  Q
    |||||||||||||||||||||||||||||    
T  30547169 caaattctatggtacacccaaaaatttga 30547141  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 51184042 - 51184074
Alignment:
Q  69 gacaaattctatggtacacccaaaaatttgagt 101  Q
    |||||||||||||||||||||||| ||||||||    
T  51184042 gacaaattctatggtacacccaaagatttgagt 51184074  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 2088870 - 2088903
Alignment:
Q  71 caaattctatggtacacccaaaaatttgagtata 104  Q
    ||||||||||||||||| ||||||||||||||||    
T  2088870 caaattctatggtacactcaaaaatttgagtata 2088903  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 27800439 - 27800402
Alignment:
Q  64 gataagacaaattctatggtacacccaaaaatttgagt 101  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  27800439 gataaggcaaattctatggtacatccaaaaatttgagt 27800402  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 31311386 - 31311447
Alignment:
Q  115 tacaccaaaccgttaaattaataattaaatgacttgnnnnnnngaagaaaaagaattatttt 176  Q
    |||| |||| |||||||||||||||||||||| |||       |||||||||||||||||||    
T  31311386 tacatcaaatcgttaaattaataattaaatgagttgtttttttgaagaaaaagaattatttt 31311447  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 101
Target Start/End: Complemental strand, 6975103 - 6975074
Alignment:
Q  72 aaattctatggtacacccaaaaatttgagt 101  Q
    ||||||||||||||||||||||||||||||    
T  6975103 aaattctatggtacacccaaaaatttgagt 6975074  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 1371405 - 1371441
Alignment:
Q  65 ataagacaaattctatggtacacccaaaaatttgagt 101  Q
    |||||||||||||||||| |||| |||||||||||||    
T  1371405 ataagacaaattctatggcacactcaaaaatttgagt 1371441  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 1379153 - 1379189
Alignment:
Q  65 ataagacaaattctatggtacacccaaaaatttgagt 101  Q
    |||||||||||||||||| |||| |||||||||||||    
T  1379153 ataagacaaattctatggcacactcaaaaatttgagt 1379189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 2020 - 2052
Alignment:
Q  69 gacaaattctatggtacacccaaaaatttgagt 101  Q
    ||||||||||||||||||| |||||||||||||    
T  2020 gacaaattctatggtacactcaaaaatttgagt 2052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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