View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0434_low_7 (Length: 374)
Name: NF0434_low_7
Description: NF0434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0434_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 99 - 265
Target Start/End: Complemental strand, 29100966 - 29100800
Alignment:
| Q |
99 |
ataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccagaatgggtaaaaccgaactaatattcaatgcatttccatattcaac |
198 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29100966 |
ataacacagctgtataatgaaggtgcagggcacggaaccagagtatacgatccagaatgggtaaaaccgaactaatattcaatacatttccatattcaac |
29100867 |
T |
|
| Q |
199 |
aaatcatcaaacataagcttatgcaacccctggaacactctcaaccagcatgatatattaatatctg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29100866 |
aaatcatcaaacataagcttatgcaaccccttgaacactctcaaccagcatgatatattaatatctg |
29100800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 29063030 - 29062867
Alignment:
| Q |
99 |
ataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccagaatgggtaaaaccgaactaatattcaatgcatttccatattcaac |
198 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29063030 |
ataacacagctgtataatgaaggtgcagggcacgaaaccagagtatacgatccagaatgggtaaaaccgaactaatattcaatacatttccatattcaac |
29062931 |
T |
|
| Q |
199 |
aaatcatcaaacataagcttatgcaacccctggaacactctcaaccagcatgatatattaatat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29062930 |
aaatcatcaaacataagcttatgcaaccccttgaacactctcaaccagcatgatatattaatat |
29062867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 29117884 - 29117721
Alignment:
| Q |
99 |
ataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccagaatgggtaaaaccgaactaatattcaatgcatttccatattcaac |
198 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29117884 |
ataacacagctgtataatgaaggtgcagggcacgaaaccagagtatacgatccagaatgggtaaaaccgaactaatattcaatacatttccatattcaac |
29117785 |
T |
|
| Q |
199 |
aaatcatcaaacataagcttatgcaacccctggaacactctcaaccagcatgatatattaatat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29117784 |
aaatcatcaaacataagcttatgcaaccccttgaacactctcaaccagcatgatatattaatat |
29117721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 4259860 - 4259802
Alignment:
| Q |
162 |
aaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttat |
220 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||| |||| || ||||||||||||| |
|
|
| T |
4259860 |
aaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttat |
4259802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 4263482 - 4263424
Alignment:
| Q |
162 |
aaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttat |
220 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||| |||| || ||||||||||||| |
|
|
| T |
4263482 |
aaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttat |
4263424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 20 times since January 2019
Visitors: 3251